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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATACCGATAATCGCCGCTTACCCCTTCATGACGCGCTTGTCGGGAATAAGGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtatacgaactttcgctcgctacggttaacatctgagatcgaccttgcaagatctgagaccttgcaacacgcaaaagcgtactgatgtgtgtctaagtattgttgatcag

Basic information

species Zea mays
transcript GRMZM5G877788_T03
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211451241|gb|FL460010.1|FL460010
EST:     TACGTCGCGGCGATGCTCAAAAGSGTCCTCGCC                         ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
genomic: TACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
EST: gi|211396502|gb|FK986087.1|FK986087
EST:     GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCC                         ATCACCAGAGTCACCGGCMCATCGCTCCTGCAGAACAACGCTGTG
genomic: GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
EST: gi|76926346|gb|DV170820.1|DV170820
EST:     GGCTTGGTGTGCCTCTTTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCC                         ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
genomic: GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
EST: gi|71427484|gb|DR808534.1|DR808534
EST:     GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCC                         ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
genomic: GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
EST: gi|76018157|gb|DT945327.1|DT945327
EST:     GGCTTGGTGTGCCTCTTTACGTCGCGGGGATGCTCAAAAGCGTCCTCGCC                         ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
genomic: GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
EST: gi|78123316|gb|DV541700.1|DV541700
EST:     GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCC                         ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
genomic: GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
EST: gi|74243543|gb|DT651457.1|DT651457
EST:     GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCC                         ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
genomic: GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
EST: gi|149077505|gb|EE166202.2|EE166202
EST:     GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCC                         ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
genomic: GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
EST: gi|74233874|gb|DT641788.1|DT641788
EST:     GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCC                         ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
genomic: GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
EST: gi|94474394|gb|EB703352.1|EB703352
EST:     GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCC                         ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
genomic: GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
EST: gi|71428520|gb|DR809570.1|DR809570
EST:     GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCC                         ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
genomic: GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
EST: gi|78084898|gb|DV513291.1|DV513291
EST:     GGCTTGGTGTGCCTCTTTACGTCGCGGGGATGCTCAAAAGGGTCCTCGCC                         ATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG
genomic: GGCTTGGTGTGCCTCTCTACGTCGCGGCGATGCTCAAAAGCGTCCTCGCCgtaagtgtat ... tgttgatcagATCACCAGAGTCACCGGCACATCGCTCCTGCAGAACAACGCTGTG