1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTTAACCCTGTTGCCATACAAGAGGCGTTTGAAGCCAGGGCTCTCAGGATGGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaacgatgaccgtattgtagttgctgaattggaattactgtactaacgatgaccgcatgccttgcag
species | Zea mays |
transcript | GRMZM5G864319_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|33104324|gb|CF064284.1|CF064284
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|13382067|gb|BG458742.1|BG458742
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|32835294|gb|CD974972.1|CD974972
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|149044449|gb|EE047570.2|EE047570
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGCCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|32834719|gb|CD974397.1|CD974397
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|113703173|gb|EE680677.1|EE680677
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|60395837|gb|DN228707.1|DN228707
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: AACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|19436236|gb|BM952646.1|BM952646
genomic: AACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|60356985|gb|DN223958.1|DN223958
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: CCAGAACATAGGCCAAGCAGCAAACCAAGAGGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|213179269|gb|FM196444.1|FM196444
genomic: CCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|9732140|gb|BE510892.1|BE510892
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|22490101|gb|BU050024.1|BU050024
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|19351144|gb|BM895676.1|BM895676
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|33101745|gb|CF061705.1|CF061705
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|18655285|gb|BM500090.1|BM500090
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCNCCTGATTTGCTAGAGGCNTGCAGTAGCTCACATEST: gi|60358249|gb|DN225222.1|DN225222
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCC-CCTGATTTGCTAGAGGC-TGCAGTAGCTCACAT
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|14204220|gb|BG837897.1|BG837897
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCCEST: gi|87153521|gb|DY398310.1|DY398310
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
EST: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAG GTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
genomic: GGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaa ... tgccttgcagGTTTCTATGAGCGGTCCCCTGATTTGCTAGAGGCTGCAGTAGCTCACATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTAACCCTGTTGCCATACAAGAGGCGTTTGAAGCCAGGGCTCTCAGGATGGCAGTAAACTGTGCCCAGAACATAGGCCAAGCAGCAAACCAAGAAGAAGgtagtactaacgatgaccgtattgtagttgctgaattggaattactgtactaacgatgaccgcatgccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG