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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATGCCAGTTGTTGGAGCCATAACTCTATATGTATCACTTCTGACCTTTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttctttaaacaactatatgatgtatgccccttctcttatggtctgtttgctgactcagcaagccattttttgttgtgctataattgatagcaaggcaatgatgcaatccattagtggtagtacaatgtcaattgaatcttctaactcattatatttgcttggacag

Basic information

species Zea mays
transcript GRMZM5G844195_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 11
TGACATGCCAGTTGTTGGAGCCATAACTCTATATGTATCACTTCTGACCTTTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttctttaaacaactatatgatgtatgccccttctcttatg-gtctgtttgctgactcagcaagccattttttgttgtgctataattgatagcaaggcaatgatgcaatccattagtggtagtacaatgtcaattgaatcttctaactcattatatttgcttggacag
|||||||||||||||||| ||  ||||| |||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||| ||||||         | |  |  | | |    ||| |  |   | ||  ||     || | |    || | |  ||   | | |||  | |                                                                             
TGACATGCCAGTTGTTGGTGCAGTAACTTTATATGTATCACTTTTGACATTTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTGgtaagccttcttgtgtaggggaaaaaaaatctcctaactctatagtatatgtgcatgtaatttctgtactttatatatactttctccacaatctacaaat--------------------------------------------------------------------------

upper sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 12
-TGACATGCCAGTTGTTGGAGCCATAACTCTATATGTATCACTTCTGACCTTTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttctttaaacaactatatgatgtatgccccttctcttatggtctgtttgctgactcagcaagccattttttgttgtgctataattgatagcaaggcaatgatgcaatccattagtggtagtacaatgtcaattgaatcttctaactcattatatttgcttggacag
  ||||||||  | || ||||| ||| || |  |||| || ||||| || |||||||||||||| ||||| ||||| ||||||||||| |||||||| |||||| ||    || |||||   | |        ||| |||    ||||   |||    ||    || |   ||||||  | |  |||  | | | |     || | |  ||||                                                             
ACGACATGCCTATCGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTggtatgttactttcaaaca-tcaca--------gcctctt----tatgagatgtggtatggacaagaattgcatttta-gcttagctgca-tcgtt--tctggaatttgtgca-------------------------------------------------------------

upper sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 11
TGACATGCCAGTTGTTGGAGCCATAACTCTATATGTATCACTTCTGACCTTTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttctttaaacaactatatgatgtatgccccttctcttatggtc-tgtttgctgactcagc-aagccattttttgttgtgctataattgatagcaaggcaatgatgcaatccattagtggtagtacaatgtcaattgaatcttctaactcattatatttgcttggacag
|||||||||  |||| ||||| ||| || |  |||| || ||||| || |||||||||||||| ||||| ||||| ||||||||||| |||||||| |||||| ||    || |||||   | |   | | |      | |  ||||| | ||  |      | ||| ||||    |  |    | ||  ||||  || ||                                                                          
TGACATGCCTATTGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAGTACTGgtatgttactttcaaaca-tcacaacctttttatgagatgtggtatggacatgaattgcattttagctaagctgcatcat----ttctggaatttgta-cag-------------------------------------------------------------------------

upper sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 12
lower sequence: AT1G75850.1 (Arabidopsis thaliana), 5'ss of exon 11
TGACATGCCAGTTGTTGGAGCCATAACTCTATATGTATCACTTCTGACCTTTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttctttaaacaactatatgatgtatgccccttctcttatggtctgtttgctgactcagcaagccattttttgt-tgtgctataattgatag---caaggcaatgatgcaa--tccattagtggtagtacaatgtcaattgaatcttcta-actcattatatttgcttggacag-------------------
||| |||||  |||| ||||| || ||||| | ||| || ||| |||| ||||||||||| || ||||||||||||||||| ||||| || |||||  ||||| |  ||| ||      | ||||| | | |   | ||   | |   |    |   |  ||       |  | |    | | || |   ||| | |    ||  | || | || ||  | ||||  |     |  |   | | ||||||||  |  |  | |    ||    |    |                    
TGAGATGCCTATTGTCGGAGCTATGACTCTGTTTGTCTCTCTTTTGACTTTTACTCTCCGAGTTCATCCTGATCGGCTTGACTATGTGGATCAAGTATTGgtatggtttcctttcgttgccatatgttttctaaacttttagtcagtattgtctctgtagcttgtatctctgtctacactatatgttcagattcagattttcattgtaaaggtgtaaaatgcatttttaaagttttatgattacttgaatctggtgtagccctggcgttaaactaattattgatccgaaaactttgtag

upper sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 12
lower sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 10
TGACATGCCAGTTGTTGGAGCCATAACTCTATATGTATCACTTCTGACCTTTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttctttaaacaactatatg-atgtatgccccttctcttatggtctgtttgctgactcagcaagccattttttgttgtgctataattgatagcaaggcaatgatgcaatccattagtggtagtacaatgtcaattgaatcttctaactcattatatttgcttggacag
 ||||||||  || |  | ||  |||| ||||||   || ||||| |  |||||||| |  || || |||||||||||||||||||  ||||||||| |||| ||| |||||  | | ||| |||  |  |||    ||  |||||      ||||    ||||       | | || |||       |  ||  | ||    | ||                                                                   
AGACATGCCTATTCTGAGTGCAGTAACCCTATATTCCTCCCTTCTCAAGTTTACTCTTCACGTTCACCCTGATCGGCTTGATTATGCGGACCAAGTGTTGgtcagttttcttatagcgactgtatttacctattgttctcttcttaactcaagtttaaatactc-------cgtcttctgtca-atgttgcttagtggcctatcgatc------------------------------------------------------------------

upper sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv18s0001g14680.t01 (Vitis vinifera), 5'ss of exon 11
TGACATGCCAGTTGTTGGAGCCATAACTCTATATGTATCACTTCTGACCTTTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttct-ttaaacaactatatgatgtatgccccttct-cttatggtct-gtttgctgactcagcaagccattttttgttgtgctataattgatagcaaggcaatgatgcaatccattagtggtagtacaatgtcaattgaatcttctaactcattatatttgcttggacag
||||||||| ||| ||||||| |||||| ||||||| || ||||| || |||||||| ||||| ||||||||||||||||||||||| || ||||| |||||| |||  |  ||| ||||   |      ||||  || | | |  ||||| | | |  |  |  | |  |  |  | | |    |  | |   || |                                                                              
TGACATGCCTGTTTTTGGAGCAATAACTTTATATGTCTCTCTTCTTACATTTACTCTTCGTGTTCATCCTGATCGGCTTGATTATGTGGATCAAGTACTGgtatgtccccaattatacaaagttcatgcttatgatccatttgcacatggttttgctaacgaatgctgatacacgatctataaaattttctggctgctgc----------------------------------------------------------------------------

upper sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 11
TGACATGCCAGTTGTTGGAGCCATAACTCTATATGTATCACTTCTGACCTTTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttctttaaacaactatatgatgtatgccccttctcttatggtctgtttgctgactcagcaagccattttttgttgtgctataattgatagcaaggcaatgatgcaatccattagtggtagtacaatgtcaattgaatcttctaactcattatatttgcttggacag
|||||||||  || |||||||  |||||||||||  ||| ||||| || |||||||| | ||| || |||||||||||||||||||| || ||||| |||||| || |  |||| | ||||   |           || || ||  || ||   | |    |  |      ||||||  || |   | ||   | |  ||||  || || ||    |  |                                                     
TGACATGCCTATTTTTGGAGCTGTAACTCTATATTCATCTCTTCTCACTTTTACTCTGCATGTGCACCCTGATCGGCTTGATTATGTGGATCAAGTTCTGgtatgtttcatttata-aactcctt----------tctacttttgcgggctaggttccagttttg------attttt--ttatttgaaaaccaagattaaggatatcat-cacctaagca-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19058370|gb|BM737037.1|BM737037
EST:     TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTG                         GGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
genomic: TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttc ... gcttggacagGGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
EST: gi|18963630|gb|BM660543.1|BM660543
EST:     TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTG                         GGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
genomic: TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttc ... gcttggacagGGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
EST: gi|33094690|gb|CF054684.1|CF054684
EST:     GTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTG                         GGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
genomic: GTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttc ... gcttggacagGGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
EST: gi|87153186|gb|DY397975.1|DY397975
EST:     TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTG                         GGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAGGATAGCAGG
genomic: TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttc ... gcttggacagGGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
EST: gi|33094433|gb|CF054427.1|CF054427
EST:     GTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTG                         GGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
genomic: GTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttc ... gcttggacagGGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
EST: gi|19058197|gb|BM736864.1|BM736864
EST:     TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTG                         GGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
genomic: TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttc ... gcttggacagGGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
EST: gi|18963632|gb|BM660544.1|BM660544
EST:     TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTG                         GGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
genomic: TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttc ... gcttggacagGGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
EST: gi|19057727|gb|BM736394.1|BM736394
EST:     TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTG                         GGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG
genomic: TTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttc ... gcttggacagGGTGCATGTGTCAAGAAACTTTCAGGCAAGGCAAAACTTGAAGATAGCAGG