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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTCGTCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttcatgcctactcgtttcagcattattgtcgatgctgttacagccagctaaatgtgtatctccaagtttgttctttgtatatccaccagctcacatgcttctgccacttctgttctgcag

Basic information

species Zea mays
transcript GRMZM5G835235_T04
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835235_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g14860.3 (Oryza sativa), 5'ss of exon 11
GAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTCGTCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtt-tcatgcctactcgt-ttcagcattattgtcgatgct-gttacagccagctaaatgtgtatctccaagtttgttctttgtatatccacc---agctcacatgctt----ctgccacttctgttctgcag-------------------------------------------
|| || ||||| |||||||||||||| ||||||||||| |||||| |||| ||||| |||||||||||  |||| || || ||||||||||||||||| |||| ||| | |  | |  ||   || | | || |||    | |  |||| ||   | | ||   |   || |||  |||||||   ||| |||      | || |||   |     |||| | |  |    | | |                                           
GAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTCGCCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtgaaacatgatcacatttatccttgttgatattaccagttaaagtttgttcaagcaggcacttcaa--ttgttctggttatttccgttgtaaacttacaatttgggagctgcaagtcataactttctgatatgatcagctacttacgttgcccctttcttgtttcttgcag

upper sequence: GRMZM5G835235_T02 (Zea mays), 5'ss of exon 10
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 11
GAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTCGTCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttcatgcctactcgtttcagcattattgtcgatgctgttacagccagctaaatgtgtatctccaagtttgttctttgtatatccaccagctcacatgcttctgccacttctgttctgcag
|| |||||||  |||||||||||||| ||| | || |||||||| ||||| ||||||||||| ||    || ||||| || | ||| |||||||     |||  ||  | || || |   ||  |    | |      ||  ||  | |     |   ||   |                                                              
GAAGCGCTTGCACACCCATTCTTTGATGAGTTGCGGGATCCTAACACTCGACTTCCAAATGGTCGTCCGCTACCACCTCTGTACAATTTCAAGCAATTGGgtgagtgcc-tgtctccagcttctattcctttcaggcttgaagtcgc-gttttttcgttgcacag-------------------------------------------------------------

upper sequence: GRMZM5G835235_T02 (Zea mays), 5'ss of exon 10
lower sequence: EFJ04915 (Selaginella moellendorffii), 5'ss of exon 11
GAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTCGTCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttcatgcctactcgtttcagcattattgtcgatgctgttacagccagctaaatgtgtatctccaagtttgttctttgtatatccaccagctcacatgcttctgccacttctgttctgcag
|| |||||||  |||||||||||||| ||| | || |||||||| ||||| ||||||||||| ||    || ||||| || | ||| |||||||     |||  ||  | || || ||  ||  |    | |      ||  ||  |       |   ||   |                                                              
GAAGCGCTTGCACACCCATTCTTTGATGAGTTGCGGGATCCTAACACTCGACTTCCAAATGGTCGTCCGCTACCACCTCTGTACAATTTCAAGCAATTGGgtgagtgcc-tgtctcctgcttctattcctttcaggcttgaagtcgcgttt--ttcgttgcacag-------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20337055|gb|BQ172685.1|BQ172685
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|4621641|gb|AI612474.1|AI612474
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|32859083|gb|CD998764.1|CD998764
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|5740140|gb|AI947830.1|AI947830
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|33092593|gb|CF052587.1|CF052587
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|211246876|gb|FL472897.1|FL472897
EST:     TTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|32865480|gb|CF005162.1|CF005162
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|32865498|gb|CF005180.1|CF005180
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|28986914|gb|CB351371.1|CB351371
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|4647428|gb|AI622503.1|AI622503
EST:     TTCCCAAATGGCCGCTTCCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TT-CCAAATGGCCGCTT-CCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|21331244|gb|BQ486625.1|BQ486625
EST:     TCTTCCAAATGGCCGCTTCCTGCCGCCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|32928745|gb|CF033557.1|CF033557
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|60348494|gb|DN215467.1|DN215467
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|78544269|gb|DV621767.1|DV621767
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|22543122|gb|BU093560.1|BU093560
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGGCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGGTGCGAAATTGGGTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|60349422|gb|DN216395.1|DN216395
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAGATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|60395660|gb|DN228530.1|DN228530
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAGATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|211497820|gb|FL217204.1|FL217204
EST:     AAATGGCCGCTTCCTGCCACCCCTTTKCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: AAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|18172726|gb|BM348114.1|BM348114
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|32916889|gb|CF021701.1|CF021701
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|30087357|gb|CB885563.1|CB885563
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|16379449|gb|BI992951.1|BI992951
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|4621640|gb|AI612473.1|AI612473
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|29129738|gb|CB380442.1|CB380442
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: gi|18170275|gb|BM340115.1|BM340115
EST:     TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG                         AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG