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TGATAAAGGCTTTGGCTTTGTGAGGTACAGCACCCATGAGGAGGCTGCATTGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttggttcatgttttcacatttccttggtaacggagagtagattaggatttaataaaaccctgaaagttcctgggtcaattttacaatagaataa...
species | Zea mays |
transcript | GRMZM5G835213_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAAGCATCCTTGCGTCEST: gi|31361403|gb|CD445760.1|CD445760
genomic: GATGGGTAATGGCCAACTTATTGGCGGGAGGCAGAT-AAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGAC-AGCATCCTTGCCTC
EST: GCAATTCAGATGGGGTA-TGGCCAACTTATTGGCGGGAGGCAGAATAA-G TGTTCCTGGGGAAGCAAGCCGACTCCACA-GGGACAGCATCCTTGCCTCTEST: gi|149098620|gb|EE184625.2|EE184625
genomic: GCAATTCAGATGGG-TAATGGCCAACTTATTGGCGGGAGGCAGA-TAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCT
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTGEST: gi|4827563|gb|AI668255.1|AI668255
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTGEST: gi|78024764|gb|DV493151.1|DV493151
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTGEST: gi|7135994|gb|AW498371.1|AW498371
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTGEST: gi|26456718|gb|CA828301.1|CA828301
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTGEST: gi|93012834|gb|EB638354.1|EB638354
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTGEST: gi|31362301|gb|CD446658.1|CD446658
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTGEST: gi|211492468|gb|FL234470.1|FL234470
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGG-ACAGCATCCTTGCCTCTGEST: gi|211492467|gb|FL234469.1|FL234469
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTGEST: gi|31361559|gb|CD445916.1|CD445916
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTGEST: gi|149104834|gb|EE290298.2|EE290298
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTGEST: gi|71439176|gb|DR820226.1|DR820226
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTGEST: gi|148944553|gb|EC889677.2|EC889677
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTTTGEST: gi|71431559|gb|DR812609.1|DR812609
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
EST: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAG TGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
genomic: TGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttgg ... tttgttgcagTGTTCCTGGGGAAGCAAGCCGACTCCACAAGGGACAGCATCCTTGCCTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAAAGGCTTTGGCTTTGTGAGGTACAGCACCCATGAGGAGGCTGCATTGGCAATTCAGATGGGTAATGGCCAACTTATTGGCGGGAGGCAGATAAAGgtatctttggttcatgttttcacatttccttggtaacggagagtagattaggatttaataaaaccctgaaagttcctgggtcaattttacaatagaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatagaa