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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTCGAAATGGATGGCAACAAATACATTTATGAGgtaattgtcatatcatattattagtgatatacaaattctctttaattttcttatatattagtgttattttatattgcaag

Basic information

species Zea mays
transcript GRMZM5G830776_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G830776_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os06g04450.2 (Oryza sativa), 5'ss of exon 10
ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTCGAAATGGATGGCAACAAATACATTTATGAGgtaattgtcatatcatattattagtgatatacaaattctctttaattttcttatatattagtgttattttatattgcaag
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||| ||| ||||| |||||| | | ||  |||   ||| || | ||  | ||| | |||   ||| ||| | ||| |||
ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTTGAAATGGATGGCCAAAAATACATATATGAGgtaaatgtgatatcgtattat-aataatgaacatgatctgttcacttgccctat-tcttatgtttaatttctgttggaag

upper sequence: GRMZM5G830776_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA01G34340.1 (Glycine max), 5'ss of exon 5
ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTCGAAATGGATGGCAACAAATACATTTATGAGgta--attgtcatat-catattattagtgatat-acaaattctctttaattttcttatat-attagtgttattttatattgcaag---------------
|| |||||||| ||||||||||||||||||||||| |||||||||||| |  |  | ||||||||  | ||||| ||  ||||||||  | | |    |   |    ||      || |   || ||  |          |||  | || |     || | |    ||                
ATTGCACCTGTCATTCATGAATGGACCTATGATGCTATGTGCCATGATTTGTTGAATATGGATGGAGATAAATATATGCATGAGgtatgacttttgcttgtttgcccttcccttcatcatgtatgctggtcggcccaaggataagactactaaagcttcaaacaaaaaattatttactaacaat

upper sequence: GRMZM5G830776_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA03G02740.1 (Glycine max), 5'ss of exon 10
ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTCGAAATGGATGGCAACAAATACATTTATGAGgta--attgtca------tatcatattattagtgat--atacaaattctctt----taattttcttata--tattagtgttattttatattgcaag----
|| |||||||| ||||||||||||||||||||||| |||||||||||| |  |    ||||||||  | ||||| ||  ||||||||  | | |        |  | |    ||  | ||  |||||| |   |      |||   |  || |  |  ||     |  |||| |   |||    
ATTGCACCTGTCATTCATGAATGGACCTATGATGCTATGTGCCATGATTTGTTGACTATGGATGGAGATAAATATATGCATGAGgtatgacttttgcttgtttgcccttcccttcatcatgtatacaagtcggccaagaataaggctactaaaacttctaacaaaaagttatttactaagtttt

upper sequence: GRMZM5G830776_T01 (Zea mays), 5'ss of exon 10
lower sequence: AT1G02010.1 (Arabidopsis thaliana), 5'ss of exon 10
ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTCGAAATGGATGGCAACAAATACATTTATGAGgtaattgtcatatcatattattagtgatatacaaattctctttaattttcttatatattagtgtt-attttatattgcaag-------------------------------------------------------------------------------------
|| || ||| | || || ||||||||||||||||| |||||||||||| | || || ||||| || || ||| |  |   |||||||||| | || |    || |||    |   ||| || | |    || |   |        |    | |   ||  |   |                                                                                     
ATCGCTCCTATCATACACGAATGGACCTATGATGCTATGTGCCATGATTTGCTTGACATGGAGGGGAATAAACATGTCATTGAGgtaattct-atttttctttcttatcctt---caacttttttccgtttctgaaaggccccgatccggactgcctaaagtccggtcgagagaagtcctagccaacgatcctattgaggatcgcgggcgttacagtttctctcttcctaatctctctaccatatgctag

upper sequence: GRMZM5G830776_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv15s0048g00970.t01 (Vitis vinifera), 5'ss of exon 9
ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTCGAAATGGATGGCAACAAATACATTTATGAGgta-attgtcatatcatattattagtgatatacaaattctctttaattttcttatata-ttagtgttattttatattgcaag---------
||||| ||||| || |||||||||||||||||||| |||||||||||| |||| || |||||||| || |||||  |  | |||||| ||  |  | | || ||  |  | ||       |    |  |  |  |||  | |  |  || |     ||| |  ||          
ATAGCTCCTGTCATACATGAATGGACCTATGATGCCATGTGCCATGATTTACTGGAGATGGATGGAAATAAATATGTACACGAGgtacatctttttgttatttttgttttcatggttttgtatgttaaatatcacttgaagaacttttgctggaggatactcaaacatatattag

upper sequence: GRMZM5G830776_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv15s0045g00060.t01 (Vitis vinifera), 5'ss of exon 2
ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTCGAAATGGATGGCAACAAATACATTTATGAGgta-attgtcatatcatattattagtgatatacaaattctctttaattttcttatata-ttagtgttattttatattgcaag---------
||||| ||||| || |||||||||||||||||||| |||||||||||| |||| || |||||||| || |||||  |  | |||||| ||  |  | | || ||  |  | ||       |    |  |  |  |||  | |  |  ||||     ||| |  ||          
ATAGCTCCTGTCATACATGAATGGACCTATGATGCCATGTGCCATGATTTACTGGATATGGATGGAAATAAATATGTACACGAGgtacatctttttgttatttttgttttcatggttttgtatgttaaatatcacttgaagaacttttgttggaggatactcaaacatatattag

upper sequence: GRMZM5G830776_T01 (Zea mays), 5'ss of exon 10
lower sequence: PP1S468_8V6.1 (Physcomitrella patens), 5'ss of exon 10
ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTCGAAATGGATGGCAACAAATACATTTATGAGgtaattgtcatatcatattattagtgatatacaaattctctttaattttcttatatattagtgttattttatattgcaag----------------------
 |  | || ||||| ||||| ||| | |||||||||||||||||||||||  |  |  | || |||||||| ||   ||| ||||||      | ||  | |  | |||  ||       ||  |||   |   ||||     |  |||   |      | ||                       
GTGACTCCGGTTATACATGAGTGGTCGTATGATGCAATGTGCCATGATCTTTTGAATTTAGAAGGCAACAAGTATTCTTACGAGgtatggaaaacatattttcttcagt--taatgggcctcattttgcatagattatgcggcatcgttgactatggcagtaaattgttctggaaccaggtttagg

upper sequence: GRMZM5G830776_T01 (Zea mays), 5'ss of exon 10
lower sequence: EFJ06496 (Selaginella moellendorffii), 5'ss of exon 10
ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTCGAAATGGATGGCAACAAATACATTTATGAGgtaattgtcatatcatattattagtgatatacaaattctctttaattttcttatatattagtgttattttatattgcaag
 | || ||  |||| ||||| ||||| |||||||| |||||||||||||| || |  || || |||||||||||| |||||||||| |   | |||     |   |  ||   |  |    | ||||  |||||| |                           
GTTGCGCCATTTATACATGAGTGGACGTATGATGCTATGTGCCATGATCTTCTAGGCATCGAAGGCAACAAATACGTTTATGAGgtgaggattatagttcttgccttctgccctgaag---cgcttttcttttctgaag-------------------------

upper sequence: GRMZM5G830776_T01 (Zea mays), 5'ss of exon 10
lower sequence: EFJ05985 (Selaginella moellendorffii), 5'ss of exon 10
ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTCGAAATGGATGGCAACAAATACATTTATGAGgtaattgtcatatcatattattagtgatatacaaattctctttaattttcttatatattagtgttattttatattgcaag
 | || ||  |||| ||||| ||||| |||||||| |||||||||||||| || |  || || |||||||||||| |||||||||| |   | |||        ||  ||     |  |  | ||||  |||||| |                           
GTTGCGCCATTTATACATGAGTGGACGTATGATGCTATGTGCCATGATCTTCTAGGCATCGAAGGCAACAAATACGTTTATGAGgtgaggattata-------gttcttgccgccctgaagcgcttttcttttctgaag-------------------------