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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTGCAAGGGAACAAGTTCACTGGCCCAATTCCTTCAGTAATTGGCCTTATGCAGGCTCTCGCTGTCCTgtaagtctcacagtgaattctagatgattgactaatctacaaatcagacattgcattctcattgctgccttgctggtagtgaaagaaatatgattgctaactcatgaaacttttactctatcag

Basic information

species Zea mays
transcript GRMZM5G809695_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G809695_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os06g10230.1 (Oryza sativa), 5'ss of exon 11
ATCCTTGCAAGGGAACAAGTTCACTGGCCCAATTCCTTCAGTAATTGGCCTTATGCAGGCTCTCGCTGTCCTgtaagtctcacagtgaattctagatgattgactaatctacaaatcagacattgcattctcattgctgccttgctggtagtgaaagaaatatgattgctaactcatgaaacttttactctatcag
||| ||||||||||||| ||| ||||| || ||||| ||||| ||||| |||||||||||||||||||| ||||||||   |   |||| |   ||  ||| |  |   ||||| |  |  ||||     | | ||  || ||              | ||||  |   | |   ||  |||||| |||||  |||
ATCTTTGCAAGGGAACATGTTTACTGGTCCTATTCCATCAGTTATTGGACTTATGCAGGCTCTCGCTGTACTgtaagtacaatgatgaact---gaatattcatca---tacaa-ttggttattga----taaatgaagctttc------------aagatattttaattcatcaatataacttt-actcttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211377235|gb|FL413744.1|FL413744
EST:     ACTGGCCCAATTCCTTCAGNAATTGGCCTTATGCAGGCTCTCGCTGTCCT                         AGATCTGAGTTACAACCAATTATCTGGNCCTATACCATCTATACTAGGCAA
genomic: ACTGGCCCAATTCCTTCAGTAATTGGCCTTATGCAGGCTCTCGCTGTCCTgtaagtctca ... actctatcagAGATCTGAGTTACAACCAATTATCTGGTCCTATACCATCTATACTAGGCAA
EST: gi|211280748|gb|FL403182.1|FL403182
EST:     ACTGGCCCAATTCCTTCAGTAATTGGCCTTATGCAGGCTCTCGCTGTCCT                         AGATCTGAGTTACAACCAATTATCTGGGTCCTATACCATCTATACTAGGCA
genomic: ACTGGCCCAATTCCTTCAGTAATTGGCCTTATGCAGGCTCTCGCTGTCCTgtaagtctca ... actctatcagAGATCTGAGTTACAACCAATTATCTGG-TCCTATACCATCTATACTAGGCA
EST: gi|211397955|gb|FL395271.1|FL395271
EST:     ACTGGCCCAATTCCTTCAGTAATTGGCCTTATGCAGGCTCTCGCTGTCCT                         ANATCTGAGTTACAACCAATTATCTGGTCCTATACCATCTATACTAGGCAA
genomic: ACTGGCCCAATTCCTTCAGTAATTGGCCTTATGCAGGCTCTCGCTGTCCTgtaagtctca ... actctatcagAGATCTGAGTTACAACCAATTATCTGGTCCTATACCATCTATACTAGGCAA