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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAGgttacatgatataatcagtttctgttccagaattattatgtcaaaacatttgtttcagttcacatcatcgcaagcattaacttccccttgcccactttcag

Basic information

species Zea mays
transcript GRMZM2G704032_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G704032_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 5'ss of exon 11
GTACAATACCTTTTGTGGCTATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAGgttacatgatataatcagtttctgttccagaattattatgtcaaaacatttgtttcagttcacatcatcgcaag--cattaacttccc-cttgcccactttcag
|||||| || |||||||||||||| || ||||| || |||||||||||||| | ||| |||||||||||||||||||  | |  |    || | ||   |  |||   | | ||    ||   | || |  |  | |||  ||    | ||  ||||  |||     |||||||
GTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAGgttacattctctcttttcattttattattgt-ttaccttattaa--tgttatgtgcactctattttatcataatataactattttcctacttattatctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71761132|gb|DR959069.1|DR959069
EST:     AAAATGCCTAAAAAAGGACTTTGCAGAAGAG                         GTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
genomic: AAAATGCCT-AAAAAGGACCTTGCAGAAGAGgttacatgat ... ccactttcagGTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
EST: gi|149000343|gb|EE037503.2|EE037503
EST:     ATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAG                         GTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
genomic: ATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAGgttacatgat ... ccactttcagGTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
EST: gi|149107037|gb|EE188931.2|EE188931
EST:     ATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAG                         GTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
genomic: ATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAGgttacatgat ... ccactttcagGTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
EST: gi|110944040|gb|EE164197.1|EE164197
EST:     ATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAG                         GTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
genomic: ATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAGgttacatgat ... ccactttcagGTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
EST: gi|78023713|gb|DV492100.1|DV492100
EST:     GCCTAAAAAGGACCTTGCAGAAGAG                         GTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
genomic: GCCTAAAAAGGACCTTGCAGAAGAGgttacatgat ... ccactttcagGTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
EST: gi|148975093|gb|EE025660.2|EE025660
EST:     TTCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAG                         GTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
genomic: ATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAGgttacatgat ... ccactttcagGTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
EST: gi|60356237|gb|DN223210.1|DN223210
EST:     ATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAG                         GTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT
genomic: ATCCGCCAGAGGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAGgttacatgat ... ccactttcagGTTTGGAGGCTACAGGCAGCTTTGGGAGAACAATCTGAAATCACCAAGTGT