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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag

Basic information

species Zea mays
transcript GRMZM2G591258_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctg-acagcgga-atgccttt--ctcaa-attttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag
| ||||||||| | || |||||||| ||||| ||| | ||||||||||||||||| ||||| || || ||||||||||||||  | ||  ||||||||||||| || | ||||  || | || | | ||| | |    |||  | || || ||  |  ||     |     |    ||   ||| |||   | |  |   |   |                   
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAATCCTATGAAGGACTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttgacttttttttttcaattattgtaattttttt-tgttctgtcttgtaaag------------------

upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctgacagcggaatgcctttctcaaattttgtgtgtctttctcaaaatgcaacac-acctgaggtttctttacatgcaatagcgaggacccagata-tccatttcaag
| | ||||||  | || |||||||| ||||| ||| | ||||||||||| |  || ||||| || || ||||||||| | ||||| ||  |||||||||||||||| | || |   || |    ||    ||| ||   |  |    | | |  |  || ||  | |  | |  | || | | | | ||   ||  |     | | ||| |      ||  
ATTGTGAGCAATTGGGTGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAAGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaaacttgtttttctgttggtaatagacctcatttaattgagatattatccaatgtatttctgc-tgatgta-tgttcctctaaataatatggaacag-

upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 19
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag
| | ||| ||  | || |||||||||||||| ||  | |||||||| ||||  || ||||| || || || |||||| ||||||| ||| |||||||||||||| |  |     ||      |||   || | |    |  ||      |    |||  || ||      |   || |  |  ||   ||||       ||| || |       ||  
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaactctttca--tgtttttagaa---ctgttttggctggtggacaagtgatgcaatttgtaaaggggatattgtctgctatcagctaatatttttttccctga-acttgggacag-

upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaa--attttgtg-tgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag
| | ||| ||  | || |||||||||||||| ||  | |||||||| ||||  || ||||| || || || |||||| ||||||| ||| |||||||||||||||| || |   |   |  | | ||  ||             ||| || | ||   |||  | |      ||||  | || | |  |   ||        |||  | |       ||  
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattcct-tcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctga--tatcatcagctaatatttttttccccctaa-acttgggacag-

upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag---
| | ||| ||||| || || ||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | ||| ||||||| |||||   | ||||      | |    | | |  |   | || |          | |||| |    |    ||    ||   ||   |    ||     | |       ||  | |       
ATTGTGAACAGCTCGGTGTAGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgta---tttctta--agaaacaatgtacatgacatcagttct-------ccacacaaactattgcttttctagttttctatttacttttttaattttggctttttattctgtcttgtacag

upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 18
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag---
| | ||| ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | ||| ||||||| |||||   | ||||      |||    | | |  | | | || |        | | |||| |    |       || | | ||||| |     |    ||      || ||  | |       
ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgta---tttctta--agaagcaatgtacatgacaccagttct-------ctacacaaactattgc-ttttcaagttctatttacttttctaattttggctttttat-tctgtcttgtacag

upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgtgtgtctttctcaaaatgcaacac-acctgaggtttctttacatgcaatagcgaggacccagata-tccatttcaag
| | ||||||  | || |||||||| ||||| ||| | ||||||||||| |  || |||||||| || ||||||||| | ||||| ||  ||||||||||||||||  |     ||  |    ||    ||| ||   |  |   || | |  |   | ||  | |    | || || | | | | ||   ||  |     | | ||| |      ||  
ATTGTGAGCAATTGGGCGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAGGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGgtaattctttcatttggaaaaaaaacttgtttttctgttggtaattgacctcattttattgagatattgtccgatgtatttctgc-tgatgta-tgttcctctaaataatatggaacag-

upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatt-tctcttgctg-acagcgga-atg-cctttctcaaattttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag
| ||||||||| | || |||||||| ||||| ||| | ||||| ||||||||||| ||||| ||  | ||||||||||||||  | ||  ||||||||||||| || | ||||  || | || | | ||| |||   |  | |  |  || |  ||| |    |          | |  |||  | |  |    | |    | |    | |           
ATTCTGAGCAGTTGGGTGTTGATGCATGCATTAAACTCTTTGAACAATTCAAATCCTATGAAGGATTATACTTTTTCTTGGGTGCATACTTGAGCTCCAGgtatttctttcttattggagagtgaacatgacctcagttcactagttggtctgcttcactgttttttttttctttcaatttttgtaatttttttttgttctgtcttgtaaag----------

upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 20
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag
| ||||| ||| | || ||||| || || || ||| | |||||||| ||||| |||||||| ||  | |||||||||||||| || ||| ||||||||||||| ||||| ||  | | ||   ||   ||  ||  ||||||  |  | |||   | | |     |    | |  ||  |||  |  ||                             
ATTCTGAACAGTTGGGTGTTGAGGCATGTATAAAACTGTTTGAGCAGTTCAAGTCTTATGAAGGATTATACTTTTTCTTGGGGTCATATTTGAGCTCCAGgta-tttcttttaataaaag--aaaaaactgactttaattttaagcattttttgtatattttcttatttttcaccttcattttgagacag----------------------------