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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCACCGTGTATTGCTAGACATAGTATCATCTGCAGCAAATGCAACTCCAGGACTTGGTAGATACCCTGCATTTAAACGAGAGgtaaaagttttaaagtgtatttaataggcaaaaaatttattagttaatgagtaattgtttttaattatttctttgtccacaag

Basic information

species Zea mays
transcript GRMZM2G485898_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G485898_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os08g32920.1 (Oryza sativa), 5'ss of exon 11
GTTCACCGTGTATTGCTAGACATAGTATCATCTGCAGCAAATGCAACTCCAGGACTTGGTAGATACCCTGCATTTAAACGAGAGgtaaaagttttaaagtgtatttaataggcaaaaaatttattagttaatgagtaattgtttttaattatttctttgtccacaag
|||||||||||||||||||| ||||||||| |  |||||||||| || ||||||||||| ||||| |||  |||||| || ||||||    | |||   |  ||   | ||    ||  |||  |  || |  | || |    |||  |||| ||  | ||| ||||
GTTCACCGTGTATTGCTAGATATAGTATCAGCCACAGCAAATGCCACCCCAGGACTTGGCAGATATCCTCTATTTAAGCGTGAGgtatct-tcttaggattcat---aaagagggaagctttcatgattcaccattagtaacatttt-ttatctccatttccgcaag