1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCCCATTGACATCTCTACGTCGAGCTCTCCCTCTCCACCAACTAACAGTTCCTGACAGTGGAGCAGAAATTCATTAAGAGCATATAGGGATTCACAAGTGgtacatgtattctgcctatctttatttcttagtattatataaactacatactgtatttggagatgcattgtttattctctgcaatcggttaaccctggac...
species | Zea mays |
transcript | GRMZM2G480607_T06 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCTGACAGTGGAGCAGAAATTCATTAAGAGCATATAGGGATTCACAAGTG ATTTTGAGCCCAACAATCTCGCTGCCACCGATACTNCCTGGTTCGTATATTEST: gi|211196285|gb|FL474589.1|FL474589
genomic: CCTGACAGTGGAGCAGAAATTCATTAAGAGCATATAGGGATTCACAAGTGgtacatgtat ... ttactgctagATTTTGAGCCCAACAATCTCGCTGCCACCGATACT-CCTGGTTCGTATATT
EST: CCTGACAGTGGAGCAGAAATTCATTAAGAGCATATAGGGATTCACAAGTG ATTTTGAGCCCAACAATCTCGCTGCCACCGATACTCCTGGTTCGTATATTTEST: gi|71761611|gb|DR959548.1|DR959548
genomic: CCTGACAGTGGAGCAGAAATTCATTAAGAGCATATAGGGATTCACAAGTGgtacatgtat ... ttactgctagATTTTGAGCCCAACAATCTCGCTGCCACCGATACTCCTGGTTCGTATATTT
EST: CCTGACAGTGGAGCAGAAATTCATTAAGAGCATATAGGGATTCACAAGTG ATTTTGAGCCCAACAATCTCGCTGCCACCGATACTCCTGGTTCGTATATTT
genomic: CCTGACAGTGGAGCAGAAATTCATTAAGAGCATATAGGGATTCACAAGTGgtacatgtat ... ttactgctagATTTTGAGCCCAACAATCTCGCTGCCACCGATACTCCTGGTTCGTATATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCATTGACATCTCTACGTCGAGCTCTCCCTCTCCACCAACTAACAGTTCCTGACAGTGGAGCAGAAATTCATTAAGAGCATATAGGGATTCACAAGTGgtacatgtattctgcctatctttatttcttagtattatataaactacatactgtatttggagatgcattgtttattctctgcaatcggttaaccctggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA