1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGTTACTTGGTCAATCTTCGTGGTTATTGCAACTCTCCTTCATCAAAACTTTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTGCATGgtaaagtgtcatttttgtttatcagcatacatcttgattgcatttatcttttcatctttaattgcttttttttaaataaacacattaacaagcttgttac...
species | Zea mays |
transcript | GRMZM2G479243_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTGCATG AAAAGTCTGAACAGTTGGATTGGGATGCACGTATTAACATCATACTTGGAGEST: gi|4753348|gb|AI657253.1|AI657253
genomic: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTGCATGgtaaagtgtc ... atctttgcagAAAAGTCTGAACAGTTGGATTGGGATGCACGTATTAACATCATACTTGGAG
EST: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTGCATG AAAAGTCTGAACAGTTGGATTGGGATGCACGTATTAACATCATACTTGGAGEST: gi|13382220|gb|BG458895.1|BG458895
genomic: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTGCATGgtaaagtgtc ... atctttgcagAAAAGTCTGAACAGTTGGATTGGGATGCACGTATTAACATCATACTTGGAG
EST: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTGCATG AAAAGTCTGAACAGTTGGATTGGGATGCACGTATTAACATCATACTTGGAGEST: gi|116827567|gb|EC871481.1|EC871481
genomic: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTGCATGgtaaagtgtc ... atctttgcagAAAAGTCTGAACAGTTGGATTGGGATGCACGTATTAACATCATACTTGGAG
EST: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATG AAAAGTCTGAACAGTTGGATTGGGATGCACGTATTAACATCATACTTGGAG
genomic: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTGCATGgtaaagtgtc ... atctttgcagAAAAGTCTGAACAGTTGGATTGGGATGCACGTATTAACATCATACTTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTTACTTGGTCAATCTTCGTGGTTATTGCAACTCTCCTTCATCAAAACTTTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTGCATGgtaaagtgtcatttttgtttatcagcatacatcttgattgcatttatcttttcatctttaattgcttttttttaaataaacacattaacaagcttgttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaca