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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGATTGCGGACTGCAGGATATGTCAATTGTCCCCTTTCTTGATGCCCTAAGATCTCACAAAACAATAGCAGTTTTGGATCTTTCTCATAATTTACTAGgtagcctttttcaagtaactacagtcatttcatttcataattactcgacagttctgtataaatcagttacagctaagtggttgtttctttaggcccttgt...

Basic information

species Zea mays
transcript GRMZM2G472023_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G472023_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os02g54170.1 (Oryza sativa), 5'ss of exon 2
TCTGATTGCGGACTGCAGGATATGTCAATTGTCCCCTTTCTTGATGCCCTAAGATCTCACAAAACAATAGCAGTTTTGGATCTTTCTCATAATTTACTAGgtagcctttttcaagtaactacagtcatttcatttcataattactcgacagttctgtataaatcagttacagctaagt-ggttgtttctttaggcccttgt-----------------------------------------------------------------------------
|||||||| ||||| || ||  |||| ||    || ||||||||||| |||||||  || ||||||||||| || ||||||||||| |||||| | |||||||  ||||||| | ||     |    |||| |||| || ||  ||     |  | | |||   |   ||   | | | ||| |  ||        |  ||                                                                             
TCTGATTGTGGACTCCAAGACCTGTCGATCACACCTTTTCTTGATGCTCTAAGATTACATAAAACAATAGCTGTGTTGGATCTTTCCCATAATATGCTAGgtatgctttttccaata----tatctctttcttttcctagtttgtc--ttatcttatgtaatctacgcaccaatgatttggtggcatcgcagaaagccagttcaagctaaatgtgtgtgtaccatattaattcctctatgcttttacaatgactaaagtttatgttcacgaactgcag

upper sequence: GRMZM2G472023_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os02g54280.1 (Oryza sativa), 5'ss of exon 12
TCTGATTGCGGACTGCAGGATATGTCAATTGTCCCCTTTCTTGATGCCCTAAGATCTCACAAAACAATAGCAGTTTTGGATCTTTCTCATAATTTACTAGgtagcctttttcaagtaa--------ctacagtcatttcatttcat--------------aattactcgacagttctgtataaa-tcagttacagctaagtggttgtttct----ttaggccct-tgt---------------------------------------
|||||||| ||||| || ||  |||| ||    || ||||||||||| |||| ||  || ||||||||||| || ||||||||||| |||||| | |||||||  ||||||| ||||         || |    | ||  | | ||              ||| | | | |        | |||  |||||  |||||| ||  ||| | |    |||   ||| | |                                       
TCTGATTGTGGACTCCAAGACCTGTCGATCACACCTTTTCTTGATGCTCTAAAATTACATAAAACAATAGCTGTGTTGGATCTTTCCCATAATATGCTAGgtatgctttttccagtatatctgtttcttctcctagtttgtcttatgtaatctatgcaccaatgatttggcgacatcacagaaagccagttcaagctaaatgtgtgtgtatcatattaattcctctatgctcttacaatgactaaagtttatgttcacgaactgcag