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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgcagtgtactgttcagcttctgaaattagcgtgctgtaaacagatgttgctttacaaaacttaggaacacactgacgcatatatttcactatataccag

Basic information

species Zea mays
transcript GRMZM2G458549_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458549_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA07G36610.1 (Glycine max), 5'ss of exon 11
TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgcagtgtactgttcagcttctgaaattagc---------gtgctgtaaacagatgttgctttacaaaacttagg--aacacactgacgcatatatttcactatataccag-------------------------------------------------------------------------
 || || | || ||| ||||| ||||| || ||||||||||| || ||| | |||||||||||  |||| |||||||||||       |  ||||| || |  |      |||  |         || ||||    |    ||  |||| ||  | |       ||      |   |  |       | ||| |||                                                                         
CGACGAGGACATGCTAAAGAAGCTTGGCGACCTTATGAACGAAAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgacttacagtactcttaaaatgtatgcattgtcaattgtttggttctgtctggaaggattattttataaggcatgatttgtcatgtgagcttttccaaccttaaaaatagcagaatgaagcatacttccttgtaaaatgtagtttcctttgtatgcactattgatattctttattaatggaatcag

upper sequence: GRMZM2G458549_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA17G03990.1 (Glycine max), 5'ss of exon 11
TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacc--tttgcagt-----gtactgttcagct---tctgaaattagc------gtgctgtaaacagatgttgctttacaaaacttagg--aacacactgacgcatatatttcactatataccag---------------------------------------------------------------------------
||| || | || ||| ||||| |||||||| |||||||||||||| ||| | |||||||||||  |||| |||||||||||     || |||      ||||| || |  |   |    | | |        || |  |  | |    ||| |||| ||  | |       ||      |   |  |       | ||| |||                                                                           
TGACGAGGACATGCTAAAGAAGCTTGGTGACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgacttacagacaacagtactcttaaattgtatgcatagtcaatcgtttggttccctctagaaggattgttttataaggcatgatttgtcatgtgagctttttcaaccttgaaaatagcagaatgaagaatacttgtaaaatttagtttccttgttcagcacttaaaattgatatattctttattcatggaatcag

upper sequence: GRMZM2G458549_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA08G47350.1 (Glycine max), 5'ss of exon 11
TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgcagtgtactgttcagcttctgaaattagcgtgctgt-----aaacagatgttgctttacaaaacttaggaacaca-ctgacg--catatatttcactatataccag----------------------------------------------------------------------------------
|||||||   | ||| ||||| |||||||| ||| |||| ||||| ||||| ||||| || || |||||||||||||||||    | |    |||||    | ||  ||| |  |  | ||||     ||  | |||    ||||       |  ||      ||   |    |||||||     |  |   |                                                                                  
TGAGGAA---ATGCTAAAGAAGCTTGGTGACCTTTTGAATGAGAGTCATTATAGCTGTAGTGTTCTATACGAATGCAGgtattaataccaaatactg---ggttttagaattctgtcttctgtttataaagaacatgcaattttattgtgtgtttgacagtgtctagtggttgtatatttagtgcttgatttgtgttatatgatctctttcaatcttcaaatcactaatattgcgtgtacaatgtcattttttttttctttttactttgaatcag

upper sequence: GRMZM2G458549_T01 (Zea mays), 5'ss of exon 11
lower sequence: AT3G06580.1 (Arabidopsis thaliana), 5'ss of exon 11
TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacct----ttgcagtgtactgttcagcttctgaaattagcgtgctgtaaacagatgttgctttacaaaacttaggaacacactgacgcatatatttcactatataccag
||| ||||  ||| | ||||||||||||||||| ||||| || ||||||||||||||||| || |||||||| ||||||| | |    ||    |  | |||| ||    ||||| | |  |  ||| || ||   |   |||    || || |  | |   ||  |                      
TGACGAAGAGAAGTTAAAGAAACTTGGTGATCTCATGAATGAAAGCCATTACAGCTGCAGTGTCCTATACGAGTGCAGgtgcataaatttaagatccaatgttaagag--tgaaact-gtttaatgtgaaaaggattgattttg---aatttggtgaaatcgtgcag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50337770|gb|CO532896.1|CO532896
EST:     GATTTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|60349907|gb|DN216880.1|DN216880
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|60398990|gb|DN231806.1|DN231806
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|67018909|gb|CO447658.1|CO447658
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|149071532|gb|EE159923.2|EE159923
EST:     GATTTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|76011230|gb|DT938400.1|DT938400
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|93014043|gb|EB639563.1|EB639563
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|78111011|gb|DV529408.1|DV529408
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|60338971|gb|DN205944.1|DN205944
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|110524608|gb|EE028792.1|EE028792
EST:     GATTTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|148951726|gb|EC897479.2|EC897479
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCTTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|71434413|gb|DR815463.1|DR815463
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|32944106|gb|CF048925.1|CF048925
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|116826426|gb|EC870214.1|EC870214
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|88746509|gb|DY530650.1|DY530650
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|60345732|gb|DN212705.1|DN212705
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|32833835|gb|CD973513.1|CD973513
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|87152649|gb|DY397438.1|DY397438
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|37386348|gb|CF630360.1|CF630360
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAATGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|148960155|gb|EE153405.2|EE153405
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|17969988|gb|BM276757.1|BM276757
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|78025070|gb|DV493457.1|DV493457
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|211541591|gb|FL022794.1|FL022794
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGARCTGGAGGAGCTTGTGAAGGTCTGCA
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCA
EST: gi|71434164|gb|DR815214.1|DR815214
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|67016317|gb|CO445066.1|CO445066
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCATCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|76912625|gb|DV164824.1|DV164824
EST:     GATTTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|71762160|gb|DR960097.1|DR960097
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|32943061|gb|CF047880.1|CF047880
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|211541592|gb|FL022795.1|FL022795
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|71318358|gb|DR795941.1|DR795941
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|32835728|gb|CD975406.1|CD975406
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAGCGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|71434414|gb|DR815464.1|DR815464
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|71447465|gb|DR828515.1|DR828515
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|211135219|gb|FL444577.1|FL444577
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|74231837|gb|DT639751.1|DT639751
EST:     GATTTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|50337771|gb|CO532897.1|CO532897
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|71773515|gb|DR971415.1|DR971415
EST:     GATTTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|78085243|gb|DV513636.1|DV513636
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
EST: gi|50330092|gb|CO525218.1|CO525218
EST:     GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAG                         TTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT
genomic: GATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 100

TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACTGGGAGCACGTCTGACAGGAGCTGGGTGGGGTGGCTGCGCGGTTGCTCTG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 120

TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACTGGGAGCACGTCTGACAGGAGCTGGGTGGGGTGGCTGCGCGGTTGCTCTG


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 93

TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACTGGGAGCACGTCTGACAGGAGCTGGGTGGGGTGGCTGCGCGGTTGCTCTG


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 224

TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgc ... tatataccagTTGCCCTGAGCTGGAGGAGCTTGTGAAGGTCTGCAGAGACAACGGAGCACTGGGAGCACGTCTGACAGGAGCTGGGTGGGGTGGCTGCGCGGTTGCTCTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgcagtgtactgttcagcttctgaaattagcgtgctgtaaacagatgttgctttacaaaacttaggaacacactgacgcatatatttcactatataccag

- - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG