1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CACGTCAAATGCTGAATCAGGTTCAGATGTTGATGATCTTGGATCCCCTGTGGCTCCTGAAGATGTTGAATATCCTAGTTTGGCCCCAGTTCGAGAGGAAgtacagtcttactaagttctgttatgtttttttggagatattttattatttttgtcgtatgtctatcttggaactgtgaagatttgaacttgcacattca...
species | Zea mays |
transcript | GRMZM2G452580_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGGCTCCTGAAGATGTTGAATATCCTAGTTTGGCCCCAGTTCGAGAGGAA GCGAGGGAATCAGGATCTACAACATATAGTGGTTCAATTGGCATGTCTCGTEST: gi|19350803|gb|BM895335.1|BM895335
genomic: TGGCTCCTGAAGATGTTGAATATCCTAGTTTGGCCCCAGTTCGAGAGGAAgtacagtctt ... taccctgtagGCGAGGGAATCAGGATCTACAACATATAGTGGTTCAATTGGCATGTCTCGT
EST: TGGCTCCTGAAGATGTTGAATATCCTAGTTTGGCCCCAGTTCGAGAGGAA GCGAGGGAATCAGGATCTACAACATATAGTGGTTCAATTGGCATGTCTCGTEST: gi|87152853|gb|DY397642.1|DY397642
genomic: TGGCTCCTGAAGATGTTGAATATCCTAGTTTGGCCCCAGTTCGAGAGGAAgtacagtctt ... taccctgtagGCGAGGGAATCAGGATCTACAACATATAGTGGTTCAATTGGCATGTCTCGT
EST: TGGCTCCTGAAGATGTTGAATATCCTAGTTTGGCCCCAGTTCGAGAGGAA GCGAGGGAATCAGGATCTACAACATATAGTGGTTCAATTGGCATGTCTCGTEST: gi|22491431|gb|BU051354.1|BU051354
genomic: TGGCTCCTGAAGATGTTGAATATCCTAGTTTGGCCCCAGTTCGAGAGGAAgtacagtctt ... taccctgtagGCGAGGGAATCAGGATCTACAACATATAGTGGTTCAATTGGCATGTCTCGT
EST: TGGCTCCTGAAGATGTTGAATATCCTAGTTTGGCCCCAGTTCGAGAGGAA GCGAGGGAATCAGGATCTACAACATATAGTGGTTCAATTGGCATGTCTCGT
genomic: TGGCTCCTGAAGATGTTGAATATCCTAGTTTGGCCCCAGTTCGAGAGGAAgtacagtctt ... taccctgtagGCGAGGGAATCAGGATCTACAACATATAGTGGTTCAATTGGCATGTCTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGTCAAATGCTGAATCAGGTTCAGATGTTGATGATCTTGGATCCCCTGTGGCTCCTGAAGATGTTGAATATCCTAGTTTGGCCCCAGTTCGAGAGGAAgtacagtcttactaagttctgttatgtttttttggagatattttattatttttgtcgtatgtctatcttggaactgtgaagatttgaacttgcacattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA