Sequence
atgc intronic sequence ATGC exonic sequenceAGCACCTGTTGCTAGTATGGATAGCAGTGGTAAAATCATATGGGCCAAACATAACGAAGTTCAAACTGTCAATATCAAGGCAGTTGGTGCGGATGCTGAGgttatctttgtaagctgtgccatcctgttgataatggttaattccatattctgatttataatactcttaattttcttcatatgccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 10
AGCACCTGTTGCTAGTATGGATAGCAGTGGTAAAATCATATGGGCCAAACATAACGAAGTTCAAACTGTCAATATCAAGGCAGTTGGTGCGGATGCTGAGgtta----tctttgtaagctgtgccatcctgttgata---atggttaattccatattctgatttataatactcttaattttcttcatatgccag
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AGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGATGTGGAGgtatgggctcatttttaccctttttgtccgtgtaatatgtaagcaaaagtggaaacttgctttagtgacacatgcaagtat-tatgttttttag
upper sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 10
AGCACCTGTTGCTAGTATGGATAGCAGTGGTAAAATCATATGGGCCAAACATAACGAAGTTCAAACTGTCAATATCAAGGCAGTTGGTGCGGATGCTGAGgt-----tatctttgtaagctgtgccatcctgttgata---atggttaattccatattctgatttataatactcttaattttcttcatatgccag
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AGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGAAGTGTAGGAGCAGATGTGGAGgtatgggctcatttttacctttttttatccgtctaatatgtaagcaaaagtggaaacttgctttagtgacacatgcaagta-ctatgttttttag
upper sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 11
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 10
AGCACCTGTTGCTAGTATGGATAGCAGTGGTAAAATCATATGGGCCAAACATAACGAAGTTCAAACTGTCAATATCAAGGCAGTTGGTGCGGATGCTGAGgttatctttgtaagctgtgc------catcctgttgataatggttaattccatattctgatttataatactcttaattttcttcatat-gccag------------------------
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TGAACCAGTAGCTAGTATGGATAATAGTGGAAAGATCATATGGGCTAAACACAATGAAATTCAAACAGTTAATATTAGAAGTGTTGGGGCAGATTATGAGgtttatttccctacatgtgcagatttcatctttttggctgagatggatgagaaactattttttctcttctttttgctttgtctaacatagtcaatttggtaacatctattattctcag
upper sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 11
lower sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 10
AGCACCTGTTGCTAGTATGGATAGCAGTGGTAAAATCATATGGGCCAAACATAACGAAGTTCAAACTGTCAATATCAAGGCAGTTGGTGCGGATGCTGAGgt------tatctttgta-agctgtgccatcctgttgataatggtta-----attccatattctgatttata-atactcttaattttcttca--tatgccag------------------------------------------------------------------
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GGCACCAGTTGCTAGCATGGATGGTAGTGGTAAAATCATATGGGCAAAACACAATGAAATACAGACTGTCAATGTCAAGGCAGTTGGTGCTGATTTCGAGgtggcgcctactcctgtttaaaaattagattcaaataaagttagttgtatttgttttatactttctttcctgtgcaatgttagttatcattagctatatttagaactatcatgtagtaatatcaaataactgaagctttttcatgtttttatttttatttttgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|160481610|gb|EY254442.1|EY254442EST: TGGTGCGGATGCTGAG ATTGCAGATGGAGAACGTCTGCCATTGGCTGTGAAGGAGCTAGGAAGTTGC
genomic: TGGTGCGGATGCTGAGgttatctttg ... catatgccagATTGCAGATGGAGAACGTCTGCCATTGGCTGTGAAGGAGCTAGGAAGTTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCACCTGTTGCTAGTATGGATAGCAGTGGTAAAATCATATGGGCCAAACATAACGAAGTTCAAACTGTCAATATCAAGGCAGTTGGTGCGGATGCTGAGgttatctttgtaagctgtgccatcctgttgataatggttaattccatattctgatttataatactcttaattttcttcatatgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG