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GGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGGgtgagcagaacatgtccctgctgcgtgcgaagggaggaggcaggctcctgactcctctccattttattttatcggttgcag
species | Zea mays |
transcript | GRMZM2G437859_T04 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATGATC-TTTTCTCCATGCTGG GGAAATTTGGAGCGTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCGEST: gi|149071735|gb|EE160128.2|EE160128
genomic: ATGATCTTTTTCTCCATGCTGGgtgagcagaa ... tcggttgcagGGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCG
EST: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGG GGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCGEST: gi|71759661|gb|DR957598.1|DR957598
genomic: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGGgtgagcagaa ... tcggttgcagGGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCG
EST: CGGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGG GGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCGEST: gi|74238881|gb|DT646795.1|DT646795
genomic: C-GGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGGgtgagcagaa ... tcggttgcagGGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCG
EST: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGG GGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCGEST: gi|50337438|gb|CO532564.1|CO532564
genomic: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGGgtgagcagaa ... tcggttgcagGGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCG
EST: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGG GGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCGEST: gi|211379070|gb|FL028411.1|FL028411
genomic: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGGgtgagcagaa ... tcggttgcagGGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCG
EST: ACGGGTCATACAGATCTCAGCTGGCTTCATGATATTTTTCTCCATGCTGG GGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCGEST: gi|166597529|gb|EG272921.1|EG272921
genomic: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGGgtgagcagaa ... tcggttgcagGGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCG
EST: CGGGTCATACAGATCTCAGCTAGGCTTCATGATCTTTTTCTCCATGCTGG GGAAATTTGGAGCCTTGTTCGCTTCCATCCCGEST: gi|76287139|gb|DV026707.1|DV026707
genomic: CGGGTCATACAGATCTCAGCT-GGCTTCATGATCTTTTTCTCCATGCTGGgtgagcagaa ... tcggttgcagGGAAATTTGGAGCCTTGTTCGCTTCCATCCCG
EST: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGG GGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCGEST: gi|76287138|gb|DV026706.1|DV026706
genomic: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGGgtgagcagaa ... tcggttgcagGGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCG
EST: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGG GGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCGEST: gi|71310985|gb|DR791794.1|DR791794
genomic: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGGgtgagcagaa ... tcggttgcagGGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCG
EST: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGG GGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCG
genomic: ACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGGgtgagcagaa ... tcggttgcagGGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAACGTCGGGTTGCTTGGGTCGACAAGGATCGGGAGCCGACGGGTCATACAGATCTCAGCTGGCTTCATGATCTTTTTCTCCATGCTGGgtgagcagaacatgtccctgctgcgtgcgaagggaggaggcaggctcctgactcctctccattttattttatcggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG