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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAATATTGTGTATTGCTGGTATATGCATTGGTACAATTGCTAGAGTTCGAGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTTgtaagtcagcatcttttgttgttttcagattagtaaatttacataaactattcaaggaacaaaaaaagggctgccctgttgtgaaaaaggggttatcata...

Basic information

species Zea mays
transcript GRMZM2G430675_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G430675_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os10g30610.1 (Oryza sativa), 5'ss of exon 10
CTAATATTGTGTATTGCTGGTATATGCATTGGTACAATTGCTAGAGTTCGAGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTTgtaagtcagcatcttttgttgttttcaga---ttagtaaatttacataaactattcaaggaacaaaaaaagggctgccctgttgtgaaaaaggggttatcata
 ||||||||||||| || || ||||||||||| |||||||||| ||||  ||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||  ||||  |||||||| ||    ||  ||| ||| |||||| || |  |       | | ||   |    | |  | |  |     ||   |  
TTAATATTGTGTATCGCCGGCATATGCATTGGAACAATTGCTAAAGTTAAAGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCTgtaagtcagtttctta-gttgtttttaggaacttcttaattttccataaagtaatgcatcttggtagatagca-taatatatcattatcacataatttgtag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32923118|gb|CF027930.1|CF027930
EST:     AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGCTT                         CACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
genomic: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTTgtaagtcagc ... cttattgcagCACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
EST: gi|32921859|gb|CF026671.1|CF026671
EST:     AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTT                         CACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
genomic: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTTgtaagtcagc ... cttattgcagCACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
EST: gi|32920474|gb|CF025286.1|CF025286
EST:     AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTT                         CACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
genomic: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTTgtaagtcagc ... cttattgcagCACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
EST: gi|32922314|gb|CF027126.1|CF027126
EST:     AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTT                         CACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
genomic: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTTgtaagtcagc ... cttattgcagCACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC