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TCCAAAATGATATGAGTGAATGGAAACAGGGACGCTCCTCAAAGAAAAATAACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagcaatggtttaaattagaactgtttgtattgccagtcaactggaaatggaaatggctaaatgacgccgttgagctcttgttaccacatgattcagcctaacaatttttcgcatgtgatgaggatgttggtactacagcattcgtaattgagttttttccccttcatttttggcag
species | Zea mays |
transcript | GRMZM2G420865_T03 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACACTCCEST: gi|37398106|gb|CF636362.1|CF636362
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|78090028|gb|DV518402.1|DV518402
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|32906964|gb|CF011777.1|CF011777
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|211343049|gb|FL472499.1|FL472499
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACACTCCEST: gi|166480470|gb|EG173915.1|EG173915
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: ACAAATTTGACGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGEST: gi|37373944|gb|CF623297.1|CF623297
genomic: ACAAATTTG-CGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAG
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|14203521|gb|BG837198.1|BG837198
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTWTATTACATTCCEST: gi|166480367|gb|EG112632.1|EG112632
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: GAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|60396007|gb|DN228877.1|DN228877
genomic: GAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|166491346|gb|EG261747.1|EG261747
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGEST: gi|78022212|gb|DV490599.1|DV490599
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAG
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|40337352|gb|CK371422.1|CK371422
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|211354282|gb|FK984305.1|FK984305
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|5740651|gb|AI948341.1|AI948341
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: ACCAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAACGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|166436022|gb|EG187628.1|EG187628
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AAAAAATACAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|67016515|gb|CO445264.1|CO445264
genomic: AAAAAAT-CAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|32801098|gb|CD953334.1|CD953334
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: TAAGAGCAAAGCACG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|60344195|gb|DN211168.1|DN211168
genomic: TAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCCEST: gi|60341880|gb|DN208853.1|DN208853
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
EST: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAG GTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
genomic: AACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagca ... tttttggcagGTACAAGCGGAAGTAGAAGACTCGGCCATCTCCGGGTTTATATTACATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAAAATGATATGAGTGAATGGAAACAGGGACGCTCCTCAAAGAAAAATAACAAATTTGCGCCCAAAAAATCAAGGAACTCTTTTAAGAGCAAAGCAAGgtatgcagcaatggtttaaattagaactgtttgtattgccagtcaactggaaatggaaatggctaaatgacgccgttgagctcttgttaccacatgattcagcctaacaatttttcgcatgtgatgaggatgttggtactacagcattcgtaattgagttttttccccttcatttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG