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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAGCCATCATCTTCGCCTTATAGGTTTCAAGCCATTGGATTGCTTGAAAGATTACCATAACTTAAGACCATCGACATTTATTTATCCGAGTGATGAGgtattgtgttcttctgggattgcgtcagcgtccaactgtagttttctgctgtactgcagctatccacttaattcggaggctgagaatgtcgttatttttc...

Basic information

species Zea mays
transcript GRMZM2G414496_T08
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G414496_T07 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os07g08729.1 (Oryza sativa), 5'ss of exon 12
TGCAAGCCATCATCTTCGCCTTATAGGTTTCAAGCCATTGGATTGCTTGAAAGATTACCATAACTTAAGACCATCGACATTTATTTATCCGAGTGATGAGgtattg-tgttcttctgggattgcgtcagcgtccaactgtagttttctgctgtactgcagct-atccacttaattcggaggctgagaatgtcgttatttttc
| |||| |||||||| |||||| |||| ||||||||| |||| | | | |||||||| || ||||||||||| || ||||||||||| || |||||||||||| |    ||  |    |      | | | || | ||  ||         | || ||  |  |||||     |   |  |||| | ||  ||   |     
TTCAAGTCATCATCTACGCCTTTTAGGATTCAAGCCACTGGACTACCTTAAAGATTATCACAACTTAAGACCGTCAACATTTATTTACCCCAGTGATGAGgtaataacattacttcatgtacttcttaacttcaatcttgaggccctcttggcacagctccggatccaagatttcttggagctgggtattccgagctcca--

upper sequence: GRMZM2G414496_T07 (Zea mays), 5'ss of exon 11
lower sequence: Vv05s0062g01170.t01 (Vitis vinifera), 5'ss of exon 12
TGCAAGCCATCATCTTCGCCTTATAGGTTTCAAGCCATTGGATTGCTTGAAAGATTACCATAACTTAAGACCATCGACATTTATTTATCCGAGTGATGAGgt-attgtg--ttcttctgggattgcgtcagcgtccaactgtagttttctgctgtactgcagctatccacttaattcggaggctgagaatgtcgttatttttc
| |||     |||||||||||| |||| ||||| || |||  |||||| ||||||||||| ||||| || ||||| |||||  ||| ||| | |||  |||| | | ||  ||  | | |  |||| ||    |   | | || |||| | |     | ||   ||| |    | |     | ||  || ||  ||  |    
TTCAACTGGACATCTTCGCCTTCTAGGATTCAAACCTTTGAGTTGCTTAAAAGATTACCACAACTTGAGGCCATCAACATTCGTTTTTCCTACTGACAAGgttactctgacttgcttttgttttgcttcttgttttcattctactttttttccccctttcaaggatctatcacaatattgagttgctaaggtatttgctg---