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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaatagccagacagtcgtgcaattcctatcgctaccgcttttaatttaataacatgtgttaatttattgagcag

Basic information

species Zea mays
transcript GRMZM2G395549_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaatagccagacagtcgtgcaattcctatcgctaccgcttttaattt-aataacatgtgtt---aatttattgagcag
||||| |||||||||||||||||||| ||||| | ||||||||||||||| ||||| |||||||||||||||||||| | | | || | | | || || | | || ||||| ||| |||||| || ||| |||| |||
ATCTTTGAATGAGCTTTATGTTGAAGAGGAGGATTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAGAAGgtaaagcgattagatgattgtactgct-tattgatgttatttttccttttttttttattttgaataactaatggctggaatgccttgatcag

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaatag--ccagacagtcgtgcaattcctatcgctaccgcttttaatttaataacatgtgtt---aatttattgagcag
|||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||| ||||||||||| |||||||| | ||| || | | | | || ||| | | | ||| || |||||| || ||| |||| |||
AGCTTTGAATGAGCTTTATGTTGAAGAGGAGGACTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAAAAGgtaaagcgattatatgattgtactgcttattgatgttattttt-ccttttttattttattttgaataactaatggctggaatgccttgatcag

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaat-------agccagacagtc-gtgcaattcctatcgctaccgcttttaatttaataacatgtgttaatt--tattgagcag----------------------
|| |||||||| ||||||||||||||| | || |||||| ||||| || ||||| |||||||| |||||||| || | || | | |||| | | || || | | | | ||| || | | |||| |||||| |
GGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttacttatcttttgtcttattttgacaattagcaaaaatcgagatcagaatgttatgggaaatttaaaatatttgaattattattgattggcttcaacaatacacatgagcag

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 24
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaa------ataaaaataaaatagccaga-cagtcgtgcaattcctatcg------ctaccgct--tttaatttaataacatgtgttaatttattgagcag
||||||||||| ||||| | ||||||| | || |||||||||||| || ||||| |||||||| |||||||| || || | |||| || | | | | | || || | || | | ||| ||| | | |||| || ||| ||
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttccgtatctttcaaattgctaaaattgaaatctgaatcttactgagaaacttaggggtcatttggtttgaagaaatgtttttttttttttct---

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaa------taaaaataaaatagccaga-cagtcgtgcaattcctatcgctaccgctt--ttaatttaataacatgtgttaatttattgagcag----
||||||||||| ||||| | ||||||| | || |||||||||||| || ||||| |||||||| |||||||| || || | |||| || | | | | | || || || || | | ||| | | || |||| ||
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttccttatctttcaaattgctaaaattgaaatctgaatcttaccgagacatttgggtgtgtttggtt-tgcattttcattttctgttttcattt

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaat-------agccagacagtcgtgcaattcctatcgctaccgcttttaatttaat-aacatgtgttaatt--tattgagcag--------------------
|| ||||| || |||||||| |||||| | || ||||||||||||||| ||||| |||||||| |||||||| || || | | |||| | || || | | || | | | || |||| | |||| |||||| |
AGCTTTGAATGAAATTTATGTTGAGGAAGAAGACTACGACAGACTCCGAGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGgtgaatctcggttatcttttgtcttattttgacaattagcaaaatctgagatcaggaagttatggaaaatttaaaatgtttgaattattattgattggcttcaacaatacatgagcag

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaatagccagacagtcgtgcaattcct----------atcgctaccgcttttaatttaataacatgtgttaatttattgagcag----
|| ||||| || || | || || || |||| ||||||| ||||||||||||||| || || ||||||||||| | ||||| | || || | | | || | | | || || | | ||| || | | || | ||
GGCTCTGAATGAGATATACGTGGAAGAAGAAGACTACGATAGGTTGCGAGAGTCTATTGATTTACATGACAGCTTTGACCAGATTGGCCTCGCTCAGAAGgtaaagttcaaatatactacccctttaatattttctctctttaaaaatggaaaaagaatggccttagagatgatataatcttcctgtgaatggtgcgaacag

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaatagccagacagtcgtg-caattcctatcgctaccgcttttaatttaataacatgtgttaatttat-tgagcag
||||||||||| ||||| || |||||| | || | |||||| |||||||||||||| || ||||| |||||||| | | | | || || | | | || | || | | | || |||| || | | || | || |||
AGCATTAAATGGTATTCATGTAGAGGAGGAGGACTATGATAGACTTCGGGAATCAATAGATATGCATGATAACTTTGACCAGATAGGCCTTGCACAGAAGgtgagagagattgaatttattttgttaatgttggtaggcttcataagcagaacatgtac----ataagatctagtgatgcgtgtggacag