Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaatagccagacagtcgtgcaattcctatcgctaccgcttttaatttaataacatgtgttaatttattgagcag

Basic information

species Zea mays
transcript GRMZM2G395549_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaatagccagacagtcgtgcaattcctatcgctaccgcttttaattt-aataacatgtgtt---aatttattgagcag
                            ||||| |||||||||||||||||||| ||||| | ||||||||||||||| ||||| ||||||||||||||||||||   |  | |  || |     |  |  ||   ||  | |  ||     ||||| ||| ||||||   ||     |||   |||| |||
ATCTTTGAATGAGCTTTATGTTGAAGAGGAGGATTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAGAAGgtaaagcgattagatgattgtactgct-tattgatgttatttttccttttttttttattttgaataactaatggctggaatgccttgatcag

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaatag--ccagacagtcgtgcaattcctatcgctaccgcttttaatttaataacatgtgtt---aatttattgagcag
                            |||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||| ||||||||||| ||||||||   |  |||  || |  |     | |  ||  |||  |  |  |     |||   || ||||||   ||     |||   |||| |||
AGCTTTGAATGAGCTTTATGTTGAAGAGGAGGACTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAAAAGgtaaagcgattatatgattgtactgcttattgatgttattttt-ccttttttattttattttgaataactaatggctggaatgccttgatcag

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaat-------agccagacagtc-gtgcaattcctatcgctaccgcttttaatttaataacatgtgttaatt--tattgagcag----------------------
                            || |||||||| ||||||||||||||| | ||   |||||| ||||| || ||||| |||||||| |||||||| ||    |  ||   |       |    |||| |  |   || ||        |  | | |        ||| || | | ||||  ||||||   |                      
GGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttacttatcttttgtcttattttgacaattagcaaaaatcgagatcagaatgttatgggaaatttaaaatatttgaattattattgattggcttcaacaatacacatgagcag

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 24
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaa------ataaaaataaaatagccaga-cagtcgtgcaattcctatcg------ctaccgct--tttaatttaataacatgtgttaatttattgagcag
                            ||||||||||| ||||| | ||||||| | ||   |||||||||||| || ||||| |||||||| |||||||| ||       ||    | |||| || | |   |   |   | || ||  |       ||  | |  |||  ||| |  | |||| ||  ||| ||      
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttccgtatctttcaaattgctaaaattgaaatctgaatcttactgagaaacttaggggtcatttggtttgaagaaatgtttttttttttttct---

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaa------taaaaataaaatagccaga-cagtcgtgcaattcctatcgctaccgctt--ttaatttaataacatgtgttaatttattgagcag----
                            ||||||||||| ||||| | ||||||| | ||   |||||||||||| || ||||| |||||||| |||||||| ||       ||    | |||| || | |   |   |   | || || ||  ||   |   |   |||  |      | || ||||  ||         
AGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttccttatctttcaaattgctaaaattgaaatctgaatcttaccgagacatttgggtgtgtttggtt-tgcattttcattttctgttttcattt

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaat-------agccagacagtcgtgcaattcctatcgctaccgcttttaatttaat-aacatgtgttaatt--tattgagcag--------------------
                            || ||||| || |||||||| |||||| | ||   ||||||||||||||| ||||| |||||||| |||||||| ||       ||   |       |    |||| |     || ||  |   |      || |     | | || |||| | ||||  ||||||   |                    
AGCTTTGAATGAAATTTATGTTGAGGAAGAAGACTACGACAGACTCCGAGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGgtgaatctcggttatcttttgtcttattttgacaattagcaaaatctgagatcaggaagttatggaaaatttaaaatgtttgaattattattgattggcttcaacaatacatgagcag

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaatagccagacagtcgtgcaattcct----------atcgctaccgcttttaatttaataacatgtgttaatttattgagcag----
                            || ||||| || ||  | || || ||  ||||    ||||||| ||||||||||||||| || || ||||||||||| |  ||||| | || ||    | |  |     || |          |     |  || ||  |  | |||  || |     |  || | ||      
GGCTCTGAATGAGATATACGTGGAAGAAGAAGACTACGATAGGTTGCGAGAGTCTATTGATTTACATGACAGCTTTGACCAGATTGGCCTCGCTCAGAAGgtaaagttcaaatatactacccctttaatattttctctctttaaaaatggaaaaagaatggccttagagatgatataatcttcctgtgaatggtgcgaacag

upper sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 26
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaatagccagacagtcgtg-caattcctatcgctaccgcttttaatttaataacatgtgttaatttat-tgagcag
                            ||||||||||| ||||| || |||||| | || | |||||| |||||||||||||| || ||||| |||||||| | | | |   ||  ||    |  | |  ||  |      ||    |   | | ||     |||| || |  | ||   | ||  |||
AGCATTAAATGGTATTCATGTAGAGGAGGAGGACTATGATAGACTTCGGGAATCAATAGATATGCATGATAACTTTGACCAGATAGGCCTTGCACAGAAGgtgagagagattgaatttattttgttaatgttggtaggcttcataagcagaacatgtac----ataagatctagtgatgcgtgtggacag