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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTGAGCCCCTGACTGTCCAGAGGCCAGGAACACAGACTAGGAGTTTCTGCTATGTTGCCGATATGGTTTGTCTTCCACTGCATTCTCAATTGgtttgttgttggtcaaaagactgtcagtgcactatatcaactatgccattcattgcactaaatcaactatgccattccactgcatctccatccatttactgtcagtgtcacccgttgcaacgcacgggcatatacctagtatgaatgaatagagcatagatgatggtctgatag

Basic information

species Zea mays
transcript GRMZM2G382038_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382038_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g16980.3 (Oryza sativa), 5'ss of exon 9
CGGTGAGCCCCTGACTGTCCAGAGGCCAGGAACACAGACTAGGAGTTTCTGCTATGTTGCCGATATGGTTTGTCTTCCACT--GCATTCTCAATTGgtttgttgttggtcaaaagactgtcagtgcactatatcaactatgccattcattgcactaaatcaactatgccattccactgcatctccatccatttactgtcagtgtcacccgttgcaacgcacgggcatatacctagtatgaatgaatagagcatagatgatggtctgatag
 || |||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| || ||||||||||  ||  |  | | | ||| ||  ||  | | |||   |||   ||  |   || |  ||||       |||   | | || |  | ||    |                                                                                                       
TGGCGAGCCCCTGACTGTTCAGAAGCCAGGAACACAAACTAGGAGCTTCTGCTATGTTGCTGACATGgtttgtcaccccttttgaaatgtca-ttaattaatagctggctgaaactttgatatatcattgcatca----catcatcactggtaccattttaatgcag-------------------------------------------------------------------------------------------------------