1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAAGGTAATTCCAGGCTGGAAGGTTGTATATTCTGGCGACACACGACCCTGTCCAGGTCTTATAGACGCTTCCAGAGATGCTACAGTGCTAATACATGAGgtaagccgaaggactcggagcttagtccttgatatatccatatcatatttcttgctgataataagtggcatcgttgttatgtcaacttcaaatggcagtt...
species | Zea mays |
transcript | GRMZM2G379286_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTCCAGGTCTTATAGACGCTTCCAGAGATGCTACAGTGCTAATACATGAG GCAACATTCGAGGACAGTATGAAGGACGAAGCGATTGCGAGGAACCATAGTEST: gi|60339248|gb|DN206221.1|DN206221
genomic: GTCCAGGTCTTATAGACGCTTCCAGAGATGCTACAGTGCTAATACATGAGgtaagccgaa ... tttttctcagGCAACATTCGAGGACAGTATGAAGGACGAAGCGATTGCGAGGAACCATAGT
EST: GTCCAGGTCTTATAGACGCTTCCAGAGATGCTACAGTGCTAATACATGAG GCAACATTCGAGGACAGTATGAAGGACGAAGCGATTGCGAGGAACCATAGTEST: gi|60337527|gb|DN204500.1|DN204500
genomic: GTCCAGGTCTTATAGACGCTTCCAGAGATGCTACAGTGCTAATACATGAGgtaagccgaa ... tttttctcagGCAACATTCGAGGACAGTATGAAGGACGAAGCGATTGCGAGGAACCATAGT
EST: GTCCAGGTCTTATAGACGCTTCCAGAGATGCTACAGTGCTAATACATGAG GCAACATTCGAGGACAGTATGAAGGACGAAGCGATTGCGAGGAACCATAGT
genomic: GTCCAGGTCTTATAGACGCTTCCAGAGATGCTACAGTGCTAATACATGAGgtaagccgaa ... tttttctcagGCAACATTCGAGGACAGTATGAAGGACGAAGCGATTGCGAGGAACCATAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGTAATTCCAGGCTGGAAGGTTGTATATTCTGGCGACACACGACCCTGTCCAGGTCTTATAGACGCTTCCAGAGATGCTACAGTGCTAATACATGAGgtaagccgaaggactcggagcttagtccttgatatatccatatcatatttcttgctgataataagtggcatcgttgttatgtcaacttcaaatggcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG