Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCAATGCCGATTACGGATGGAAATTTGGACCAGTCTCTTTATGGTGCAAATGACGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAGgtaagctactgttctagtggtatcactgaactctagcattagtggttcccacagattaccatgtatttaaagtgaattttgtcgtgcattgtctggctcc...

Basic information

species Zea mays
transcript GRMZM2G376074_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G376074_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os03g09270.1 (Oryza sativa), 5'ss of exon 2
TGAAGCAATGCCGATTACGGATGGAAATTTGGACCAGTCTCTTTATGGTGCAAATGACGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAGgtaagctactgttctagtggtatcactgaactctagcattagtggttcccacagattaccatgtatttaaagtgaattttgtcgtgcattgtctggctcc-
||||||| |||| |||  || || | || ||||||||||     ||| |  ||   | || || |||| |||||| |||||||||||||||||||||||||||||  ||   || |         |  |   ||||   || | |     | || ||  ||| ||||       |   |||      | |   |   |   
TGAAGCAGTGCCAATTTTGGTTGAAGATCTGGACCAGTCAACAAATGATTTAAGCAATGACTTGGGGGGCAGAGAACCCTATGTCAGAACTGATCCTGAGgtaagtgacgagtcaatgaactgtgcacaggcctagatctaattgggta-atagttttacatttattggtttccatggttgaaaaaaacttcttatgttgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67025740|gb|CO454489.1|CO454489
EST:     CAAATGAAGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAG                         GTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAG
genomic: CAAATGACGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAGgtaagctact ... tttatgatagGTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAG
EST: gi|211478838|gb|FL266345.1|FL266345
EST:     CAAATGACGATTTTGGGGCCAGAGAGCCCTATGKCAGAACTGATCCTGAG                         GTTTGTGAAGAATGTGTTGGAGAAAGGGAGAGCTGTGCATTGGTGCAGAAG
genomic: CAAATGACGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAGgtaagctact ... tttatgatagGTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAG
EST: gi|67022296|gb|CO451045.1|CO451045
EST:     CAAATGAAGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAG                         GTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAG
genomic: CAAATGACGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAGgtaagctact ... tttatgatagGTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAG