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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGTTGATTGTGGCAAAGCAAAAGAGACATCTTACGATGCACTGAATAATACTCCCTGTCTGCTTCCAACCTGGATCTCCAAGGCTTCTGCCAGACAAgtaatatttttctttcttttatactccgtttcagattataagtatttgacttttttggtacatagattaggtatatagacatacataatatctagacaca...

Basic information

species Zea mays
transcript GRMZM2G373175_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 5
TGTTGTTGATTGTGGCAAAGCAAAAGAGACATCTTACGATGCACTGAATAATACTCCCTGTCTGCTTCCAACCTGGATCTCCAAGGCTTCTGCCAGACAAgtaatatttttctttc-------------ttttatactc--cgtttcagattataagtatttgacttttttggtacatagat-taggtatatagacatacataatatctagacaca------------------------------------------------------
||| |||||||||||||||||||||||||||||||| |||||| |||| || ||||| ||| ||||||||||||||||||||||||||||||||||||| ||  | || |  | |              ||||||  |   |||  ||  ||  | | |||||  |||| ||| |   | ||     || |||    |   |||  |  | || ||                                                      
TGTGGTTGATTGTGGCAAAGCAAAAGAGACATCTTATGATGCATTGAACAACACTCCATGTTTGCTTCCAACCTGGATCTCCAAGGCTTCTGCCAGACAGgtgtttttctcttgttggagtattactaattttatttttttcgtaacactttgaatgaatttgcattttctggaatcaatatgctaataaatatttttttttaactttaacacgcatatcatcaacttctatcatatcattttggctaattaaattgtataacaatttag

upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 14
TGTTGTTGATTGTGGCAAAGCAAAAGAGACATCTTACGATGCACTGAATAATACTCCCTGTCTGCTTCCAACCTGGATCTCCAAGGCTTCTGCCAGACAAgtaatatttttctttcttttatactccgttt-cagattataagtatttgacttttttggtacatagattaggtat-atagacatacataatatctagacaca
|||| |||| || || ||||||||||| ||||| || |||||||||||||| || || ||| ||||||| || |||||||| |||| |||||| | ||||||||   | | ||||  || ||  |  || |  |  |||| | | | | |   | |    |     | | |  || ||      |  |   ||||  |    
TGTTCTTGACTGCGGAAAAGCAAAAGAAACATCATATGATGCACTGAATAACACGCCTTGTTTGCTTCCTACATGGATCTCTAAGGTTTCTGCTAAACAAgtaaggctatactttagttgattgtgtgtgtgtaatttatcactttataataatatgttcagtattactggacatcatttttgaatctgtcatctttatc--

upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 11
lower sequence: AT1G48650.1 (Arabidopsis thaliana), 5'ss of exon 11
TGTTGTTGATTGTGGCAAAGCAAAAGAGACATCTTACGATGCACTGAATAATACTCCCTGTCTGCTTCCAACCTGGATCTCCAAGGCTTCTGCCAGACAAgtaatatttttctttcttttatactccgtttcagattataagtatttgacttttttggtacatagattaggtatatagacatacataatatctagacaca------
|||  |||||||||| ||||||||||| |||||||| ||||| || || ||||| || |||||||||||| | ||||| || |||||  ||||  | ||||||| |  |     |  |   |||| |   ||| |   ||| | ||    | | || ||   ||| |   |||||||    | | |  | | |      |      
TGTGATTGATTGTGGGAAAGCAAAAGAAACATCTTATGATGCGCTTAACAATACCCCTTGTCTGCTTCCATCTTGGATTTCAAAGGCAGCTGCTCGCCAAgtaagagatagacataatgactactgc---tcaaa--gtaaattttgatttatattcgtgtgtagtt---gtatataattgtgccttttcttttcctctattacag

upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 11
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 11
TGTTGTTGATTGTGGCAAAGCAAAAGAGACATCTTACGATGCACTGAATAATACTCCCTGTCTGCTTCCAACCTGGATCTCCAAGGCTTCTGCCAGACAAgtaatatttttctttcttttatactccgtttcagattataagtatttgacttttttggtacatagattaggtatatagacataca--taatatctagacaca-----
||||||||| ||||| ||||||||||||||||| || |||||||||||||| ||||| ||| |||||||  |||||||||| |||| ||||||   ||| ||||   |  | ||    ||  |     ||| |  ||  |  |     |  ||  | |||  |||   | || |  | |||||||   ||  | |||  ||      
TGTTGTTGACTGTGGAAAAGCAAAAGAGACATCATATGATGCACTGAATAACACTCCGTGTTTGCTTCCTTCCTGGATCTCTAAGGTTTCTGCTCAACAGgtaaagctcatgttctggttgaaa---attttatctttcagatgc---agattagtagtatttag-ccaagttttcacacatacagccaagttttaggaaccttcta

upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 11
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 10
TGTTGTTGATTGTGGCAAAGCAAAAGAGACATCTTACGATGCACTGAATAATACTCCCTGTCTGCTTCCAACCTGGATCTCCAAGGCTTCTGCCAGACAAgtaatatttttctttcttttatactccgtt---tcagattataagtatttgacttttttggtacatagattaggtatatagacatacataatatctagacaca
||| || |||||||| || ||||||||||| || |||||||| |||||||| ||||| ||| | |||||  | |||||||| |||||||||||  ||||||||| |    |||   |   ||  | | ||     || ||||  | ||   | ||   ||| || ||  ||   | |  ||       |    | |    |  
TGTGGTCGATTGTGGAAAGGCAAAAGAGACGTCATACGATGCTCTGAATAACACTCCTTGTTTACTTCCTTCTTGGATCTCAAAGGCTTCTGCTCGACAAgtaacaccactctgattggcatttttctttaacctagcttatggg-atgatatttcaatggcac-taattttcttcttgagttgccttttccttttctttag-