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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAGgtctgttgatgtagtattttgttatcttcatcttctgttgcttttcctataaaaacgaagcaataactgcctttgatctgcag

Basic information

species Zea mays
transcript GRMZM2G370852_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G370852_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g03260.2 (Oryza sativa), 5'ss of exon 8
ATTTTTTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAGgtctgttgatgtagtattttgttatcttcatc--ttctgttgcttttcctataaaaa-----cgaagcaataactgcctttgatctgcag
|||| ||||||||||||||||||||||||| ||| ||||||||||  |||||||||| |||| || |||| |  |||||||||   |  |    |   |||   |||| |||     | ||||  | | |    | || ||||||
ATTTGTTAGTGACTACCGGTTTGATGTATCCAAATTGGAGCCAGTTATTGCCAAGgtttgttcatatagt-tactgttatcttttgcaatctcatcaatttcattatacaaaagagtcaaagctgttattttggtggacctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76282892|gb|DV022460.1|DV022460
EST:     AGTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
genomic: AGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
EST: gi|16916456|gb|BM072849.1|BM072849
EST:     TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
genomic: TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
EST: gi|32840108|gb|CD979789.1|CD979789
EST:     TTAGTGACTACCGGNTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAG                         CCACATTCGCCT
genomic: TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCT
EST: gi|31350830|gb|CD435187.1|CD435187
EST:     TAGTGACTACCGGTTTGATGTATCGAAACT-GAGCCCAGTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
genomic: TAGTGACTACCGGTTTGATGTATCGAAACTGGAG-CCAGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
EST: gi|60341015|gb|DN207988.1|DN207988
EST:     TTGATGTATCGAAACTGGAGCCAGGTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
genomic: TTGATGTATCGAAACTGGAGCCA-GTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
EST: gi|32840107|gb|CD979788.1|CD979788
EST:     TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
genomic: TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
EST: gi|211090106|gb|FL396339.1|FL396339
EST:     TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAG                         CCACATTCGCCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAA
genomic: TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCG-CCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAA
EST: gi|32846022|gb|CD985703.1|CD985703
EST:     TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
genomic: TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
EST: gi|32840106|gb|CD979787.1|CD979787
EST:     TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
genomic: TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
EST: gi|211011802|gb|FL408548.1|FL408548
EST:     TTAGTGACTA-CGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
genomic: TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
EST: gi|211350370|gb|FL368852.1|FL368852
EST:     TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
genomic: TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
EST: gi|148971978|gb|EE022780.2|EE022780
EST:     ACTGGAGCCAGTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
genomic: ACTGGAGCCAGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
EST: gi|149079940|gb|EE168953.2|EE168953
EST:     GTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGGATGTCAA
genomic: GTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAA-GATGTCAA
EST: gi|211524232|gb|FL397627.1|FL397627
EST:     TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAG                         CCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG
genomic: TTAGTGACTACCGGTTTGATGTATCGAAACTGGAGCCAGTAGTTGCCAAGgtctgttgat ... tgatctgcagCCACATTCGCCTGACAACCGTGCCCTAGCAAGAGAATGCAAAGATGTCAAG