1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTTAAGAGAGAGGAAACAGCAGCAGGATGCCCTACCGAAGCATGCTAATCCTGTGCTGCTCGTATCGGATCTGAAGAAGAAAGCTGAAACACTTGACCGgttcgttgccaaagaagctttctctcacatcaatttgagtatcacactgattctgacaattggttctaaaaccatgttttacag
species | Zea mays |
transcript | GRMZM2G361605_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GATCTGAAGAAGAAAGCTGAAACACTTGACCG GTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGACEST: gi|83279123|gb|DV943131.1|DV943131
genomic: GATCTGAAGAAGAAAGCTGAAACACTTGACCGgttcgttgcc ... tgttttacagGTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
EST: AAACACTTGACCG GTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGACEST: gi|60337311|gb|DN204284.1|DN204284
genomic: AAACACTTGACCGgttcgttgcc ... tgttttacagGTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
EST: CCTGTGCTGCTCGTATCGGATCTGAAGAAGAAAGCTGAAACACTTGACCG GTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGACEST: gi|67025328|gb|CO454077.1|CO454077
genomic: CCTGTGCTGCTCGTATCGGATCTGAAGAAGAAAGCTGAAACACTTGACCGgttcgttgcc ... tgttttacagGTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
EST: CCTGTGCTGCTCGTATCGGATCTGAAGAAGAAAGCTGAAACACTTGACCG GTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
genomic: CCTGTGCTGCTCGTATCGGATCTGAAGAAGAAAGCTGAAACACTTGACCGgttcgttgcc ... tgttttacagGTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTAAGAGAGAGGAAACAGCAGCAGGATGCCCTACCGAAGCATGCTAATCCTGTGCTGCTCGTATCGGATCTGAAGAAGAAAGCTGAAACACTTGACCGgttcgttgccaaagaagctttctctcacatcaatttgagtatcacactgattctgacaattggttctaaaaccatgttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA