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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGACCAGGCAACAGAATCATAGATATGGTCACAGGACCATACAAACTCATTAGACGGTGTGAAGTGACTGCAATTCTTATACTGTACGGGCTGCCAAGgtgattttctctctcattatttaacaaactaattacaattgatgtagtttccctttgatgaacgttgattctactgccaatccatgagaatgcattcatgttctaattttaatttatttaactgcatgcag

Basic information

species Zea mays
transcript GRMZM2G342105_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G342105_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g42820.4 (Oryza sativa), 5'ss of exon 12
TTGGACCAGGCAACAGAATCATAGATATGGTCACAGGACCATACAAACTCATTAGACGGTGTGAAGTGACTGCAATTCTTATACTGTACGGGCTGCCAAGgtgattt---tctctctcattatttaacaaactaatta------------------caattgatgtagt---------ttccctttg--atgaacgttgattcta--------ctgccaatccatgagaatgcattcat-------------gttctaattttaatttatttaactgcatgcag
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TTGGACCAGGAAACAAGATTGTAGACATGATTACAGGACCATACAAACTGGTTAGACGCTGTGAAGTGACTGCAATTCTTATCCTATATGGCCTTCCAAGgtatattgaattattttcatgttttatcgatctaactaatgagtactattatactgcatttactattatttttcgtttttccccttgttattggcgttgattatgcaactggcctaccaacttaggagaagttatttgtcctgaatgcatagattttcatttccattattttgattacatgcag