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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTACTGCACTATATCCACCATCAACTCAAATGATGCCTGGCTGGCAGAGAGCTCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgtcattctaatttgtgtaacatattatgcacctgagctgttactgtctttttatcttacataaggaatgctcttcaattccag

Basic information

species Zea mays
transcript GRMZM2G341732_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G341732_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g11820.1 (Oryza sativa), 5'ss of exon 10
CTTTACTGCACTATATCCACCATCAACTCAAATGATGCCTGGCTGGCAGAGAGCTCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgtcattctaatttgtgtaacatattatgcacctgagctgttactgtctttttatcttacataaggaatgctcttcaattccag
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CTTTACTTCGTTATATCCACCAGGACCTCAAACAATAGGGGGTTGGCAGAGAACACCCCAATTTGGAATGGGATATGCCATGCCATATCAGACTGCAATGgtatctat--cattctcatattagcgatttattgtgtatctga--tgttgatgtttttcctaactagataa--attatttaccaattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78077120|gb|DV505554.1|DV505554
EST:     GAGCTCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTG                         GGATTGCAATCATATCTTCACGGAGCATTTCCTCAGCCTACATATCAGCAA
genomic: GAGCTCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgt ... tcaattccagGGATTGCAATCATATCTTCACGGAGCATTTCCTCAGCCTACATATCAGCAA
EST: gi|91056962|gb|EB167380.1|EB167380
EST:     GAGCTCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTG                         GGATTGCAATCATATCTTCACGGAGCATTTCCTCAGCCTACATATCAGCAA
genomic: GAGCTCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgt ... tcaattccagGGATTGCAATCATATCTTCACGGAGCATTTCCTCAGCCTACATATCAGCAA