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TATGATGGAGAATCAGTTGAGTCGATCAAAGGATGCAGCTTCTGAAGCACTTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAGgtttgtctttgatctggtcaaccattccttgcataccgtatcctttattttgcctatgtcgagttgttttgtaatattcttattcatgtaacctaacatt...
species | Zea mays |
transcript | GRMZM2G341271_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAG ATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAGEST: gi|78084481|gb|DV512874.1|DV512874
genomic: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAGgtttgtcttt ... gaattttcagATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAG
EST: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAG ATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAGEST: gi|19822759|gb|BQ048783.1|BQ048783
genomic: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAGgtttgtcttt ... gaattttcagATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAG
EST: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAG ATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAGEST: gi|87152100|gb|DY396889.1|DY396889
genomic: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAGgtttgtcttt ... gaattttcagATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAG
EST: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAG ATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAGEST: gi|22489980|gb|BU049903.1|BU049903
genomic: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAGgtttgtcttt ... gaattttcagATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAG
EST: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAG ATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAG
genomic: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAGgtttgtcttt ... gaattttcagATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGATGGAGAATCAGTTGAGTCGATCAAAGGATGCAGCTTCTGAAGCACTTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAGgtttgtctttgatctggtcaaccattccttgcataccgtatcctttattttgcctatgtcgagttgttttgtaatattcttattcatgtaacctaacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA