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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGCCGTTGTGTTTGACAAGACTGGAACTTTAACAATTGGTAGACCTGTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAAgttgagtctcttatgtactccggttttatatgttgtactgtattacactaggtttgaattctgatatacctactttggacttcacatctgattgaacatc...

Basic information

species Zea mays
transcript GRMZM2G315931_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G315931_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os08g37950.1 (Oryza sativa), 5'ss of exon 11
TTGATGCCGTTGTGTTTGACAAGACTGGAACTTTAACAATTGGTAGACCTGTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAAgttgagt-ctcttatgtactccggttt-tatatgttgtactgtattacact----------aggttt--gaattctgatatacct---actttggacttcacatctgattgaacatc---------------------------------------------------------------------------------
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TTGATGCCATTGTGTTTGACAAGACTGGAACTTTAACAATTGGGAAACCTGTAGTGACTAAAGTAATAGCTTCTCACAGAGAGGGAGATGAAAATACAAAgttaagtgttcttatgtactttaatttatgtattgtgttcaatgcttcaatcacttgaataaagttttaaagtttcagtaggttttaaattttttgtttcccatttgattaaaattctctgcaaagcataccagtgattctggtagtgagatttatttatgagatatttctgttgataaaacatttttcgttcatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929758|gb|CF034570.1|CF034570
EST:     GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAA                         GGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGC
genomic: GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAAgttgagtctc ... ccgtcatcagGGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGC
EST: gi|211170367|gb|FL103276.1|FL103276
EST:     GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAA                         GGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGC
genomic: GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAAgttgagtctc ... ccgtcatcagGGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGC
EST: gi|13125965|gb|BG316640.1|BG316640
EST:     GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAA                         GGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGC
genomic: GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAAgttgagtctc ... ccgtcatcagGGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGC