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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGTTGCTGTTGTGGCAGCGGGAAGTTATGTTGTGTACAAATACAGACTAAGGGTAAGCTAGCACATGCACACCCTTACTTTTGTTCTTTCGTTGTTTgtccatgtttcatgatgagtgattttctatctctgggcctattccttatgtaggaatatctgttttttgtta

Basic information

species Zea mays
transcript GRMZM2G303631_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 5'ss of exon 11
---------------------------------------------AGTTGTTGCTGTTGTGGCAGCGGGAAGTTATGTTGTGTACAAATACAGACTAAGGGTAAGCTAGCACATGCACACCCTTACTTTTGTTCTTTCGTTGTTTgtccatgtttcatgatgagtgatttt-ctatctctgggcctattccttatgtaggaatatctgttttttgtta
                                             |||  | |  ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||   |  | |   |||  |   ||||  | | | ||    || ||  ||||||| |  || | || ||    ||  | ||  ||   ||| | |               
TGTTCAGGGTAAAGCAGCTTGGGCTGCAGTTTGGGGAATCTTGATAGTCTTGGTAGTTGTGGCAGCAGGAAGTTATGTTGTCTACAAATACAGACTAAGGgtaagctagctagttgataatattatctccattct--catagctttcatat-ttaaatgatgaattgttctgctgtcctatggtttgttgattgattagaact---------------

upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA20G27000.1 (Glycine max), 5'ss of exon 11
------------------------------------------AGTTGTTGCTGTTGTGGCAGCGGGAAGT---TATGTTGTGTACAAATACAGACTAAGGGTAAGCT--AGCACATGCACACCCT-----TACTTTT-GTTCTTTCGTTGTTTgtccatgtttcatgatgagtgattttctatctctgggcctattcc--------ttatgt--aggaatatctgttttttgtta---------------------------------------------------------------
                                          |||||     |||||||| || | | |    ||  ||||||||||||||||| ||||||||||||    |||||   ||   |     | || || | | ||| | ||  | |   | ||  ||  | | |  | |      |   ||| |    |        |||  |   | |  |||||    ||||||                                                               
TCAGGAGGGAAGATCAGCCTGGGCTGCTTTTTGGGTTATTTTAGTTGGCTTAGTTGTGGCTGCTGCAGGGGCATACCTTGTGTACAAATACAGAATAAGGgtaagctttgtcacattttcagtttggtgatgctattagatatttagatgcctttttttattcaattctaaattttatatagcattgtggcatgcaacgagaagcattaaattcggtatcatctgagacttgttagaaactcaaatatgagaacatgaaatttgcaatttaccggtatttttgttggtgtttttgcag