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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCTATGTATATCTGTGGATTGTGTTGCTACCAGTGAAGTTAGTGTTTCTGTGTCACTTGATCCATCAAAGATCTGGAGTAGGGAACTGATACAGCAGgcaagtgtttccattccttcattgtattagcatgtagaagcacatgaaaaattgtttttggtgacttgatagtgcatttccaagagaaatatttttattc...

Basic information

species Zea mays
transcript GRMZM2G300862_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G300862_T05 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g70300.2 (Oryza sativa), 5'ss of exon 10
AGATCTATGTATATCTGTGGATTGTGTTGCTACCAGTGAAGTTAGTGTTTCTGTGTCACTTGATCCATCAAAGATCTGGAGTAGGGAACTGATACAGCAGgcaagtgtttccattccttcattgtattagcatgtagaagca-catgaaaaattgtttttggtgacttga-tagtgcat--ttccaag--agaaatatttttattc
||||||| | |||||||| |||||||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| || || ||||||||||   | ||  || ||| | |  | || ||||  | |  |    |    | |  |  ||||   | |||| |||  || ||||  | || ||  | ||   
AGATCTAGGGATATCTGTAGATTGTGTGGCTACTAGTGAAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGGAGCAGGGAACTTATTCAACAGgcaagtgcacctat--ctacat-gcaaaatcaagtagttgtaatactgtatgccggtacttctgaccaaactagtacattctttcaaggtaaaactaactcta---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101053|gb|EE187151.2|EE187151
EST:     CTGTGTCACTTGATCCATCAAAGATCTGGAGTAGGGAACTGATACAGCAG                         GAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTA
genomic: CTGTGTCACTTGATCCATCAAAGATCTGGAGTAGGGAACTGATACAGCAGgcaagtgttt ... aatctttcagGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTA
EST: gi|89249156|gb|DY620942.1|DY620942
EST:     GGAACTGATACAGCAG                         GAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTA
genomic: GGAACTGATACAGCAGgcaagtgttt ... aatctttcagGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTA
EST: gi|32807954|gb|CD960188.1|CD960188
EST:     GATCTGGAGTAGGGAACTGATACAGCAG                         GAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTA
genomic: GATCTGGAGTAGGGAACTGATACAGCAGgcaagtgttt ... aatctttcagGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTA
EST: gi|76911222|gb|DV164206.1|DV164206
EST:     CTGTGTCACTTGATCCATCAAAGATCTGGAGTAGGGAACTGATACAGCAG                         GAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTTTA
genomic: CTGTGTCACTTGATCCATCAAAGATCTGGAGTAGGGAACTGATACAGCAGgcaagtgttt ... aatctttcagGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTA