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GTCAGCCACGGGAACTGATCCAAATGCTTCCAATCCTCCTGTTTGGCCTGCAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacattcatttaaatctgcttgttagttctatgattttgtttgctgcactgattaagataagatgcatttttggaaaagaaaattgtcattgctga...
species | Zea mays |
transcript | GRMZM2G178294_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|32933149|gb|CF037961.1|CF037961
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|32935217|gb|CF040029.1|CF040029
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|211488019|gb|FL401529.1|FL401529
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATEST: gi|60350628|gb|DN217601.1|DN217601
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCAT
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|166645093|gb|EG281141.1|EG281141
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: TCTTATGCACAGCAG GCTGCAATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAEST: gi|211371062|gb|FL377775.1|FL377775
genomic: TCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGC-ATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCA
EST: CAACTTCTGAAGCATCTGGGCAACAATGSGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATATGGEST: gi|32933726|gb|CF038538.1|CF038538
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGG
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATATGGGACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|9731923|gb|BE510675.1|BE510675
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATAEST: gi|74245848|gb|DT653762.1|DT653762
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATA
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|166462298|gb|EG185916.1|EG185916
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: CTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|60396359|gb|DN229228.1|DN229228
genomic: CTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|88747463|gb|DY531604.1|DY531604
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTTTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|211281773|gb|FL006153.1|FL006153
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|44901202|gb|CK827747.1|CK827747
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|166481585|gb|EG161613.1|EG161613
genomic: CAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: TCTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAGEST: gi|211420309|gb|FL467594.1|FL467594
genomic: TCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
EST: TGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAG GCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
genomic: TGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacatt ... ctttttttagGCTGCATATCCTGCATATGGAACTTACGACTACAGCCATCAAATGCCCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGCCACGGGAACTGATCCAAATGCTTCCAATCCTCCTGTTTGGCCTGCAACTTCTGAAGCATCTGGGCAACAATGGGGAGCTTCTTATGCACAGCAGgtcatacattcatttaaatctgcttgttagttctatgattttgtttgctgcactgattaagataagatgcatttttggaaaagaaaattgtcattgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaaa