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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTTACTTCGTTGGATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaatctattctttcttcaatggatccttcatcatactgtttgagagaaaaaaaatccttcatcatactacaacccagggatcttattgtacattgttctctcaatttagtaaagtttttatgttcttcacgcctgatcattaagttctctctcaacttgcag

Basic information

species Zea mays
transcript GRMZM2G174730_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174730_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 11
ATATTTTACTTCGTTGGATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaatctattc---tttcttcaatggatccttcatcatactgtttgagagaaaaaaaatccttcatcatactacaacccagggatcttattgtacattgt-tctctcaatttagtaaagtttttatgttcttcacgcctgatcattaagttctctctcaacttgcag
||||||||||| || || ||||| || ||||||||||| ||||| |||||||| |||||||||||||| |||   |||   ||   ||  ||  |||| |    |||    | |||| |     |||     |||  ||   |||             |||||  ||||| | ||||                                                              
ATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAGgtgggtgctatcccctcgtgttatttgtatggttgaaccatatatcagttttatttggaaa----tcttggtctgcctatggt---------ttattacacattctatctcct------------------------------------------------------------

upper sequence: GRMZM2G174730_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 11
ATATTTTACTTCGTTGGATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaatctattctttcttcaatggatccttcatcatactgtttgagagaaaaaaaatccttcatcatactacaacccagggatcttattgtacattgttctctcaatttagtaaagtttttatgttcttcacgcctgatcattaagttctctctcaacttgcag
||||| ||| |  |||||||||| |||||||||||||||||||| || || ||| | ||  ||||||||   |      |||  |  |||    | | ||   ||   |  ||  |  | |      |   |  | |  ||           |||  | | | ||                                                                      
ATATTCTACCTTATTGGATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagtctgatttctagttcttctgcttctatctccagcacttctactgcatcttggtttcttctaactctctttgttctcaatcccaatatgcag---------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149104176|gb|EE289610.2|EE289610
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|71322126|gb|DR797758.1|DR797758
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|211044188|gb|FL461688.1|FL461688
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|37400724|gb|CF637721.1|CF637721
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|113702575|gb|EE680079.1|EE680079
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|78112245|gb|DV530639.1|DV530639
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|78180134|gb|DV550507.1|DV550507
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|76927276|gb|DV171212.1|DV171212
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|5847119|gb|AW000198.1|AW000198
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|76289053|gb|DV028621.1|DV028621
EST:     GATTTGGCTTGGTCTGCCTTGGATCACTTCTGAGCATCGGTGTCATTCAG                         CAGGTCTACATGTATTTCCGTGAAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|15082749|gb|BI389433.1|BI389433
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|60396504|gb|DN229373.1|DN229373
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|211354782|gb|FL462372.1|FL462372
EST:     ATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAAGCTGCAGAGATGAAACG
genomic: ATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGG-AAAAGCTGCAGAGATGAAACG
EST: gi|32851209|gb|CD990890.1|CD990890
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|37374257|gb|CF623473.1|CF623473
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|78081464|gb|DV509876.1|DV509876
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|76289052|gb|DV028620.1|DV028620
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|5343187|gb|AI795372.1|AI795372
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|15208939|gb|BI430823.1|BI430823
EST:     TTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: TTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|91876330|gb|EB406287.1|EB406287
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
EST: gi|8551590|gb|BE128935.1|BE128935
EST:     GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAG                         CAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT
genomic: GATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaa ... caacttgcagCAAGTCTACATGTATTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAACGT