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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGCCTTAATGCGTTTGATAAAGCAGCAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattttaatggtgtaaagtactttacctgacacagttaggattgcatcaaagtttagatttttctataaccaagcgtcttttatttggtagtaat...

Basic information

species Zea mays
transcript GRMZM2G174286_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174286_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os10g39220.1 (Oryza sativa), 5'ss of exon 10
ATGTGCCTTAATGCGTTTGATAAAGCAGCAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattttaatggtgtaaagtactttacctgacacagttaggattgcatcaaagtttagatttttctataaccaa---gcgtcttttatttggtagtaat-
||||| || ||  | |||||||||||||| || |||||||||||||||||||| || ||||| ||||| |||||| |||||||   || | |  | ||   |    ||| ||  |   ||  | | |  |  |   | | | | ||    |  |||     |   | |   |      ||  
ATGTGTCTCAACACATTTGATAAAGCAGCTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgt-cttgattcattta---tttcctacttggtatgcttttgttcgtttatattgtcaaaatgttaagcattcaacttatgcagtatgacttacgacaact

upper sequence: GRMZM2G174286_T03 (Zea mays), 5'ss of exon 11
lower sequence: AT1G14530.2 (Arabidopsis thaliana), 5'ss of exon 10
ATGTGCCTTAATGCGTTTGATAAAGCAGCAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattttaatggtgta---aagtactttacctgacacagttaggattgcatcaaagtttagatttt----tctata-accaagcgtcttttatttggtagtaat---------------------------
|||||| || ||||||||||  | |||||||||||||||||  |  | ||||||||||| |||||| | |||||| ||||| |  ||  | |    |    |  |||  ||  ||     ||    || |   ||   | |  || ||    |||| | |  |||| |||||||        |||                            
ATGTGCTTTGATGCGTTTGACGATGCAGCAGATCTTGATGTCTTAGATCATCCAATCCTAAACTTCATATATTACTTGgtaagctttccattcacctcttcagctaccatatatgtgcatgtgtatatagacacactatgtgaatcttagaatctaaatatgaagcttcttttaaaaatctctaaacaaaaagtgtgttctgtttacttacag

upper sequence: GRMZM2G174286_T03 (Zea mays), 5'ss of exon 11
lower sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 10
ATGTGCCTTAATGCGTTTGATAAAGCAGCAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattttaatggtgtaaagtactttacctgacacagt-taggattgcatcaaagtttagatttttctataaccaagcgtcttttatttggtagtaat-
|||||| |||||||||||||| |||| ||| | ||||||||| || | || ||||| || |||||  | ||||||||||||  | ||||  | |     | | ||   |||  ||   | |    || |||  |    |   ||||    |  |  |         | | | |  || | 
ATGTGCTTTAATGCGTTTGATCAAGCTGCAAACCTTGATGTTTTGGATCACCCAATTCTAAACTTTATATATTACCTGgta--agttttggttggaaggacttctgctccttccatgctgtgctttttcattcataaattctttttatggtttctgataaaaaaaaaatcgattttattt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18170253|gb|BM340093.1|BM340093
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTGTTGTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTC-ACAGGAAACT
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTAC-GGAAACT
EST: gi|93284395|gb|EB676659.1|EB676659
EST:     CAGATCTTGATGTTTTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|149112907|gb|EE295706.2|EE295706
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|88754539|gb|DY538680.1|DY538680
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTTTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|5922262|gb|AW055551.1|AW055551
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|24765679|gb|CA400838.1|CA400838
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|32827198|gb|CD966876.1|CD966876
EST:     GATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: GATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|71300276|gb|DR786208.1|DR786208
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|28985354|gb|CB350599.1|CB350599
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|88749638|gb|DY533779.1|DY533779
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|78106688|gb|DV525106.1|DV525106
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|5739982|gb|AI947672.1|AI947672
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|6095420|gb|AW120087.1|AW120087
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|45846980|gb|CN070923.1|CN070923
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|101383586|gb|EB813848.1|EB813848
EST:     CAGATCTTGATGTTTTGAACCATCCAATCCTGAACTTTTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|18174253|gb|BM349641.1|BM349641
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|67017793|gb|CO446542.1|CO446542
EST:     CAGATCTTGATGTTCTGAACCATCCA-TCCTGGACTTCT-CTATTACCTG                         CTGGNTGAGATAGT
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGT
EST: gi|67020535|gb|CO449284.1|CO449284
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|113671235|gb|DW821941.1|DW821941
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTNAGCTCTGGTGCTCTTC
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTC
EST: gi|211179297|gb|FL465342.1|FL465342
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|37383767|gb|CF628916.1|CF628916
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|211215684|gb|FL434860.1|FL434860
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|31364203|gb|CD448558.1|CD448558
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
EST: gi|5757367|gb|AI964654.1|AI964654
EST:     CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTG                         CTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG
genomic: CAGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTCTATTACCTGgtatgaattt ... gcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTG