Sequence
atgc intronic sequence ATGC exonic sequenceTCAATATGGTGCCAGATGCCCTTGTGGTTACTGCCACATATCAGATGTGGAAACCCACAAGCAGGATGATCACATGGAGAGTTTTTTCCTTGCAGAAACGgtgagcatctctacagcaaatgcttctgccaattttatctttgcccatatgctggtatgcctacaatatttctggtagtgtgtctcggacatgcagtgag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g56670.2 (Oryza sativa), 5'ss of exon 14
TCAATATGGTGCCAGATGCCCTTGTGGTTACTGCCACATATCAGATGTGGAAACCCACAAGCAGGATGATCACATGGAGAGTTTTTTCCTTGCAGAAACGgtgagcatctctacagcaaatgcttctgccaattttatctttgcccatatgctggtatgcctaca-atatttctggtagtgt-gtctcggacatgcagtgag
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TCAATATGGTGCTAAATGTCCATGTGGTTACTGCCATATTTCAGATGTAGAAACCCACCAGCAGGATGACCACATGGAGAGTTTTTTCCTTGCAGAAACAgtgagtttattttcta-atataatgtggttacatccatgatttctctcatga-accagctttacagatatagccagaaacttaggagtaactttgtaacatg
upper sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 15
TCAATATGGTGCCAGATGCCCTTGTGGTTACTGCCACATATCAGATGTGGAAACCCACAAGCAGGATGATCACATGGAGAGTTTTTTCCTTGCAGAAACGgtgagcatctctacagcaaatgcttctgccaatttt-atctttgcccata---tgctggtatgcctacaatatttctggtagtgtgtctcggacatgcagtgag
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GCAGTATGGGGCTCGATGCCCTTGTGGATACTGTCACATATCAGATGTAGAGTTTCATAAACAGGAAGATCACATGGAGAGCTTTTTTCTAGCTGAAACAgtaaggatcaattttgcacctgtaaattcaaatgttgatctctcctctcagcttcttgtcgtgtttagaggaactt---cattgtgaaatggggatgaagaaa-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32834027|gb|CD973705.1|CD973705EST: AAACCCACAAGCAGGATGATCACATGGAGAGTTTTTTCCTTGCAGAAACG GTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATT
genomic: AAACCCACAAGCAGGATGATCACATGGAGAGTTTTTTCCTTGCAGAAACGgtgagcatct ... cacataccagGTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAATATGGTGCCAGATGCCCTTGTGGTTACTGCCACATATCAGATGTGGAAACCCACAAGCAGGATGATCACATGGAGAGTTTTTTCCTTGCAGAAACGgtgagcatctctacagcaaatgcttctgccaattttatctttgcccatatgctggtatgcctacaatatttctggtagtgtgtctcggacatgcagtgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA