Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgtactataaaataaatcataataaaaaattgtcatcactacaatagtaatattactgattatgatatctgttttgttgttattatttaatctttag

Basic information

species Zea mays
transcript GRMZM2G173700_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgtacta----taaaataaatcataataa---aaaattgtcatca--ctacaatagtaatattactgattatgatatctgttttgt-tgtt--attatt--taatctttag-----------------------------------
||| || ||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||||||| ||||| || |||||||| || ||||||||||| |||||||||    | |   | ||  || |     |  |||||  | |   || | |  |  | ||  |   |||  ||   |||  |  || |  | |  |  |||  |||                                     
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattgatcttttttattggtattgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgtactataaaataaatcataataaaaaattgtcatcactaca-atagtaatattactgattatgatatctgttttgttgttattatttaatctttag
 | | ||||||||||| |  | || |||||||| || ||||| || || || ||||| ||||| ||||||||||||||||| || ||||||||||| ||||||    |   || ||    ||| | |    |||||| |  | |||     |||||| ||| |      |    |||  |||||  |||        
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagcaactttatat----atatatatcattcatcattttagataaaggaattactcattcta-----taagatgtcattatttcttag-------

upper sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA07G10190.1 (Glycine max), 5'ss of exon 13
--TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgtactataaaataaatcataataaaaaattgtcatcactacaatagtaatattactgattatgatatctgttttgttgttattatttaatctttag
   | |  ||| ||||||    | || |||||||| || ||||| || || || ||||| ||||| ||||||||||||||||  || ||||||||||| ||||||    |   || ||    | | | | |  |  | | |  | | |   | |||                                          
GTGTATGTTGAAATACAAGATTTTATACGATCAGTGCTTGATGGCTTTAATGTATGTATATTTGCTTATGGCCAGACTGgtttaggaaaaacttacacaatggtaagcaactttatattcacacatatattgattttaatttaattcgccgtcttag-----------------------------------------

upper sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
lower sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgtact-ataaaataaatcataataaaaaattgtcatcactacaatagtaatattactgattatgatatctgttttgttgttattatttaatctttag
 ||||| || ||| |||| || || ||||||||||| || || | ||| || ||||| ||||||||||| ||||| || || || ||||||||||| |||||||| ||  | ||    || |  |  || ||      | | |  | | ||   ||| |   | ||| |  | |  ||||| || |  |        
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtg-----gccagacaaatgatgccact-acattcataccattatcattgtttttgtccag-------

upper sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
lower sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgtactataaaataaatcataataaaaaattgtcatcactacaatagtaatattactgattatgatatctgttttgttgttattatttaatctttag
 ||||| ||||||  ||| ||| |  | ||||| || ||||| | ||| |||||||| ||||||||||||||||| || || || |||||||| || |||||| | ||       |  |     | | |    |  | | || ||| ||||   |||||   | | |    || |||    || ||| |       
CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgta-tgtattcactgttgtttctgagagt----aagatttca-taggaataacgctgat-gcgcttttaccttcgttccctttctttcag------

upper sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
lower sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgta--ctataaaataaatcataataaaaaattgtcatcactacaatagtaatat-tactgattatgatatctgttttgttgttattatttaatctttag
||| |  || |  | |||| | || |||||  |||| ||||| |  || |||||||| ||||| ||||| |||||||||||||| |||||||| || ||||||   || ||  |  ||  |  |||  |  ||   | ||  ||||  | |||  |  |  | |   | ||| |||||     |               
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattttgttaacgatatgctttaac--caatgattataagtttttctaacagtttctattttgcaaacacag------------

upper sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
lower sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgta--ctataaaataaatcataataaaaa-attgtcatc-actacaatagtaatattactgattatgatatctgttttgttgttattatttaatctttag
||||   ||    || ||  |||| ||||| || || ||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||| || |||||||||  || | |  |   | |  ||      |||  | || | |     ||                                                  
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctccgttaggatttgtgtattaacgtctattgatgcag--------------------------------------------------

upper sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
lower sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgtactataaaataaatcataataaaaaattgtcatcactacaatagtaatattactgattatgatatctgttttgttgttattatttaatctttag
||||   ||    || ||  |||| ||||| || || ||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||| || |||||||||   |    | |       ||| |  |    || |      || | ||                                              
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggt---gtgagctccgttaagatttgtgtattaacgtc-tattgatgcag------------------------------------------