1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATCAACTGCTGAGTCTGGCTCAGAAGCTGACGATGCTATCTCCCCCAAAGCTCTCAGAAGTTACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAGgttggtagttgatctttttgcatattttctgcaattgtgtcaggctgtcagcaaatgccagtctatgtcactagaagtgcaacctaaatcccattctcctttgccctttgtgtcacggctatagattatgtcaggtgaaattaatgttgtctttgtctctttattag
species | Zea mays |
transcript | GRMZM2G171354_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTCTCAGAAGTTACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAG GTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGATEST: gi|40337029|gb|CK371099.1|CK371099
genomic: CTCTCAGAAGTTACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAGgttggtagtt ... tctttattagGTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGAT
EST: ATCCTAAGTTGACCCCAGTTCGTGAAGAG GTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGATEST: gi|71447517|gb|DR828567.1|DR828567
genomic: ATCCTAAGTTGACCCCAGTTCGTGAAGAGgttggtagtt ... tctttattagGTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGAT
EST: CTCTCAGAAGTTACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAG GTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGATEST: gi|6194954|gb|AW147058.1|AW147058
genomic: CTCTCAGAAGTTACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAGgttggtagtt ... tctttattagGTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGAT
EST: CTCTCAGAAGTTACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAG GTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGATEST: gi|211297305|gb|FK975032.1|FK975032
genomic: CTCTCAGAAGTTACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAGgttggtagtt ... tctttattagGTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGAT
EST: CTCTCAGAAGT-ACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAG GTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGATEST: gi|37397469|gb|CF636033.1|CF636033
genomic: CTCTCAGAAGTTACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAGgttggtagtt ... tctttattagGTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGAT
EST: ATCCTAAGTTGACCCCAGTTCGTGAAGAG GTCAAAATTGTCAGGGCTACGAGC-TTTCTACTCGTCTCCCTGAATATGATEST: gi|6695723|gb|AW288801.1|AW288801
genomic: ATCCTAAGTTGACCCCAGTTCGTGAAGAGgttggtagtt ... tctttattagGTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGAT
EST: CTCTCAGAAGTTACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAG GTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGAT
genomic: CTCTCAGAAGTTACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAGgttggtagtt ... tctttattagGTCAAAATTGTCAGGGCTACGAGCTTTTCTACTCGTCTCCCTGAATATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAACTGCTGAGTCTGGCTCAGAAGCTGACGATGCTATCTCCCCCAAAGCTCTCAGAAGTTACATACAACATCCTAAGTTGACCCCAGTTCGTGAAGAGgttggtagttgatctttttgcatattttctgcaattgtgtcaggctgtcagcaaatgccagtctatgtcactagaagtgcaacctaaatcccattctcctttgccctttgtgtcacggctatagattatgtcaggtgaaattaatgttgtctttgtctctttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA