1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGACAAACAAACCAATATAGAGGATTCATTGACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAGgtaaaacttttgcattgcaatagacgcagtaacaagaacttgcacattgatgatcagaaacaacagtcatttacatcacgtcacatttcagactccgtgtgataccacattcgaagcatctttgcatgtttatgtcttctgttgctatctttctggttgcag
species | Zea mays |
transcript | GRMZM2G169914_T04 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTGAAG GGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTTEST: gi|60339440|gb|DN206413.1|DN206413
genomic: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAGgtaaaacttt ... ctggttgcagGGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTT
EST: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAG GGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTTEST: gi|89761076|gb|DY689235.1|DY689235
genomic: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAGgtaaaacttt ... ctggttgcagGGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTT
EST: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAG GGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTTEST: gi|76280497|gb|DV020065.1|DV020065
genomic: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAGgtaaaacttt ... ctggttgcagGGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTT
EST: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAG GGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTTEST: gi|50325534|gb|CO520660.1|CO520660
genomic: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAGgtaaaacttt ... ctggttgcagGGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTT
EST: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAG GGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTTEST: gi|76280373|gb|DV019941.1|DV019941
genomic: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAGgtaaaacttt ... ctggttgcagGGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTT
EST: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAG GGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTT
genomic: ACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAGgtaaaacttt ... ctggttgcagGGTATCGAGCCAAGGGTACTATGGATTGGCATTGGCGGGTCGATCTTCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACAAACAAACCAATATAGAGGATTCATTGACTGTGCTCAAACTATCATGCGAGAGGAAGGTGCTGGCGCATTTTTTAAGgtaaaacttttgcattgcaatagacgcagtaacaagaacttgcacattgatgatcagaaacaacagtcatttacatcacgtcacatttcagactccgtgtgataccacattcgaagcatctttgcatgtttatgtcttctgttgctatctttctggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA