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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGATGAGTCCAGgtgaggttcatcgaactgcagttagaaaaactggtgccattattataacgtggtaatctggtctcatactgggcactagatatgaatgtgtatcttgtttttgctgctatgtttagcagaaaatatctgcatttagattgcacgttctgtttcctgtccccatgcatcattctgttttgctttgcag

Basic information

species Zea mays
transcript GRMZM2G168629_T05
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168629_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 11
ATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGATGAGTCCAGgtgaggttcatcgaactgcagttagaaaaactggtgccattattataacgtggta--atctggtctcatac-tgggcactagatatgaatgtgtatcttgtttttgctgctatgtttagcagaaaatatctgcatttagattgcacgttctgtttcctgtccccatgcatcattctgttttgctttgcag
||||| || |||||||| || |||||| |||||||||||||||||||  | || ||||||||||| ||||| |||||||| |||  || |  || |  ||    |  | |  | |  |  ||   |    | ||  ||  ||||  |    |   | ||    | |  |  |  ||  |   |||  | || | ||||||||   |      |    ||   | | |   || || ||                                   
ATGGACATCTTTAACACATTTATTGAGTTGTTACGCCAAACTGGTAACATGACAAAAGGACAAGGTGACATTGATGAGTCTAGgcaag-tctattgtgctcttatgtgcatcattattttcaacttctccaagttatagcatcttatgcagtttattggtgaaatacttttacatgcttgaagttgatcctaccatgtttagagcactgagcccatgttggcaatcc---ttttgcttttcag------------------------------

upper sequence: GRMZM2G168629_T03 (Zea mays), 5'ss of exon 11
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 12
ATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGATGAGTCCAGgtgaggttcatcgaactgcagttagaaaaactggtgccattattataacgtggtaatctggtctcatactgggcactagatatgaatgtgtatcttgtttttgctgctatgtttagcagaaaatatctgcatttagattgcacgttctgtttcctgtccccatgcatcattctgttttgctttgcag
|||||| | || || || || ||||||||  ||||||||||||| |||||||||||||| ||    |||||  ||||    |||| || || ||     |  ||||     || ||  |   ||||      |||  |      | |  |     | |     ||  || || |  ||||  | |          ||||                                                                       
ATGGATGTGTTCAATACATTTATTGAGCTACTACGCCAAACTGGAAATGTTACGAAAGGGCAGACTGACATGAATGAACTGAGgtaag-ttgat---gttaaagtttcttcaattgccgagtttat------gtgcca------tttattgtgaagtatagattagaaaagtttcccttgaatctaaactctgaattag-----------------------------------------------------------------------