Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGTTCAAGATTACTGAGGATCACAAGAAGTACTCAATCGATGAATTCGAACCCCTTCTTTTGTTCGGACTTAGCTGTGGAATGTTCTCTTCTCCTGCTgtaagtagtacgccggctaatcttagccctgtcaagctgtgcatgtgcttcagcaaattcgtcacttaataagttgctggagaaactagagccatgctgt...

Basic information

species Zea mays
transcript GRMZM2G165945_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165945_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g05900.1 (Oryza sativa), 5'ss of exon 7
TAAGTTCAAGATTACTGAGGATCACAAGAAGTACTCAATCGATGAATTCGAACCCCTTCTTTTGTTCGGACTTAGCTGTGGAATGTTCTCTTCTCCTGCTgtaagtagtacgccggctaatcttagccctgtcaagctgtgcatgtgcttcagcaaattcgtcacttaataa-gttgctggagaaactagagccatgctgt-
 |||||||| ||||||||||| |||||||| ||||| || ||||     ||||||||| | ||||| ||||| ||||| |||||||||||||| || || ||||||| || |     ||   ||       |  |  | ||  |||  |  | | | ||  |||   ||||  |     |   |    |      ||| |  
CAAGTTCAAAATTACTGAGGAGCACAAGAAATACTCGATTGATGGGACAGAACCCCTTGTGTTGTTTGGACTCAGCTGCGGAATGTTCTCTTCACCCGCCgtaagta-tatgagttttatcattgttttcatgtaaatatgtgtgtattgta-ctatttgttcagcaaatattgcaatcgccaagtgcatgtttctgcagca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71308122|gb|DR790285.1|DR790285
EST:     AACCCCTTCTTTTGTTCGGACTTAGCTGTGGAATGTTCTCTTCTCCTGCT                         GTACGCATATTCTCCGCTGCAAATGTTAGGCAGGAGCTCCAGGAATCTTTG
genomic: AACCCCTTCTTTTGTTCGGACTTAGCTGTGGAATGTTCTCTTCTCCTGCTgtaagtagta ... tgtcgcacagGTACGCATATTCTCCGCTGCAAATGTTAGGCAGGAGCTCCAGGAATCTCTG
EST: gi|78087674|gb|DV516067.1|DV516067
EST:     AACCCCTTCTTTTGTTCGGACTTAGCTGTGGAATGTTCTCTTCTCTTGCT                         GTACGCATATTTTCCGCTGCAAATGTTAGGCAGGAGCTCCAGGAATCTTTG
genomic: AACCCCTTCTTTTGTTCGGACTTAGCTGTGGAATGTTCTCTTCTCCTGCTgtaagtagta ... tgtcgcacagGTACGCATATTCTCCGCTGCAAATGTTAGGCAGGAGCTCCAGGAATCTCTG