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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGGGATCTAAACATGAATTCAGGCCCTGTTTCAACCTTCCAAGTCCATGAACATTTAAGACCTAAGgtgaaattctctcaactgaataattaaaaaggaagctatttgatgaacaaaagtaatgtaattttatgatatcactactttcag

Basic information

species Zea mays
transcript GRMZM2G165418_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165418_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os06g36770.2 (Oryza sativa), 5'ss of exon 10
CTATGGGATCTAAACATGAATTCAGGCCCTGTTTCAACCTTCCAAGTCCATGAACATTTAAGACCTAAGgtgaaattctctcaactgaataattaaaaaggaagctatttgatgaacaaaagtaatgtaattttatgatatcactactttcag
|||||||||||||||||| ||||||| ||||||||||||||||| || |||||||||||||| || ||||||| | | | ||||| |||| | ||||||| |||| || ||||||   | |      |||| |     ||     | ||||||
CTATGGGATCTAAACATGGATTCAGGTCCTGTTTCAACCTTCCAGGTTCATGAACATTTAAGGCCCAAGgtgagactttgtcaaccgaatgactaaaaag-aagccatatgatgactgata----cataatctagctgtactctaattttcag

upper sequence: GRMZM2G165418_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
CTATGGGATCTAAACATGAATTCAGGCCCTGTTTCAACCTTCCAAGTCCATGAACATTTAAGACCTAAGgtgaaatt-ctctcaactgaataat--taaaaagga-agctatttgatgaacaaaagtaatgtaattttatgatatcactactttcag--------
 |||||||  | || ||| | |||||||| |||||||||||||| || |||||| ||||||||||||||||||  || || ||  | ||| | |  || | || | | ||  |  || |      | |   ||||||||   | |   |  || |          
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag

upper sequence: GRMZM2G165418_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 10
CTATGGGATCTAAACATGAATTCAGGCCCTGTTTCAACCTTCCAAGTCCATGAACATTTAAGACCTAAGgtga---------------aa---ttctctcaactgaataattaaa----aaggaagctatttgatgaacaaaagtaatgtaatttta-tgatatcactactttcag------------------
 | |||||  |||| ||| | || |  || ||  |||| |||||||| ||||| |||||||||||||||||||               ||   | || |    |   |  ||  |    || | || |||||   |    |  || |  |||| | |   || | | || | |||                   
TTGTGGGACATAAATATGGAGTCTGTGCCAGTCGCAACTTTCCAAGTTCATGAGCATTTAAGACCTAAGgtgatttcacttcttcatgaagcttcctttttttttggtgctttgatttgaatggagttattttgggctttattgtcaaataatatgaactatttaattattatcattatttaaatcttgatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71419453|gb|DR804773.1|DR804773
EST:     ATTCAGGCCCTGTTTCAACCTTCCAAGTCCATGAACATTTAAGACTTAAG                         CTCTGTGATCTGTACGAGAATGACTCAATTTTCGACAAGTTTGAGTGCTGT
genomic: ATTCAGGCCCTGTTTCAACCTTCCAAGTCCATGAACATTTAAGACCTAAGgtgaaattct ... ctactttcagCTCTGTGATCTGTACGAGAATGACTCAATTTTCGACAAGTTTGAGTGCTGT