1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGACGATTCTGCAGGCAATCTCCTTGCTAGCTCCTGTCATGGGTGCAGAAATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgactagaagaatgttaaagaaaaatctaatcttgtcagtttctgaacaacatggtctaaaatttttcag
species | Zea mays |
transcript | GRMZM2G164352_T03 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTCAAAAGCTGCTTCCAGTCGTCATTAATTTTTCGAAGGACAG GGTTCCCAACATCAAGTTCAATGTTGCGAAAGTACTACAGTCACTTGTACCEST: gi|32847987|gb|CD987668.1|CD987668
genomic: GTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGTACTACAGTCACTTGTACC
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGTTCCCAACATCAAGTTCAATGTTGCGAAAGTEST: gi|32929892|gb|CF034704.1|CF034704
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGT
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGTTCCCAACATCAAGTTCAATGTTGCGAAAGTEST: gi|32933390|gb|CF038202.1|CF038202
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGT
EST: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG GGTTCCTAACATCAAGTTCAACGTTGCEST: gi|16925494|gb|BM078562.1|BM078562
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGC
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGTTCCCAACATCAAGTTCAATGTTGCGAAAGTACTACAGTCACTTGTACCEST: gi|6827704|gb|AW331347.1|AW331347
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGTACTACAGTCACTTGTACC
EST: ATCNCCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGTTCCCAACATCAAGTTCAATGTTGCGAAAGTACTACAGTCACTTGTACCEST: gi|32847664|gb|CD987345.1|CD987345
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGTACTACAGTCACTTGTACC
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGTTCCCAACATCAAGTTCAATGTTGCGAAAGTACEST: gi|32939366|gb|CF044185.1|CF044185
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGTAC
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGTTCCCAACATCAAGTTCAATGTTGCGAAAGTEST: gi|13557744|gb|BG549100.1|BG549100
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGT
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGTTCCCAACATCAAGTTCAATGTTGCGAAAGTACTACAGTCACTTGTACCEST: gi|33103273|gb|CF063233.1|CF063233
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGTACTACAGTCACTTGTACC
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGTTCCCAACATCAAGTTCAATGTTGCAAAAGTACEST: gi|32838745|gb|CD978426.1|CD978426
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGTAC
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGTTCCCAACATCAAGTTCAATGTTGCGAAAGTEST: gi|32928724|gb|CF033536.1|CF033536
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGT
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGTTCCCAACATCAAGTTCAATGTTGCGAAAGTEST: gi|32846843|gb|CD986524.1|CD986524
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGT
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGGTTCCCAACATCAAGTTCAATGTTGCAAAAGTEST: gi|32839365|gb|CD979046.1|CD979046
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGG-TTCCCAACATCAAGTTCAATGTTGCGAAAGT
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGTTCCCAACACCAAGTTCAATGTTGCGAAAGTEST: gi|33102660|gb|CF062620.1|CF062620
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGGTTCCCAACATCAAGTTCAATGTTGCGAAAGT
EST: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAG GGGTTCCCAACATCAAGTTCAATGTTGCAAAAGTAC
genomic: ATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgact ... aatttttcagGG-TTCCCAACATCAAGTTCAATGTTGCGAAAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACGATTCTGCAGGCAATCTCCTTGCTAGCTCCTGTCATGGGTGCAGAAATCACCTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCGAAGGACAGgtgtgtgactagaagaatgttaaagaaaaatctaatcttgtcagtttctgaacaacatggtctaaaatttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT