1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATAGTCAGGATGATGCGGGTACAAGCTCAAGGGTCATGAAACTCTCCGCTTTTCAGAAGAAAGCTCTCTCCCATGCTCTATCATgtaagtccctgtgccatttgtctctggaatagtcacgtgtcagtgcacaactgtttgcacgaactgaagcttccctccacggctccacctttgcag
species | Zea mays |
transcript | GRMZM2G163713_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CATGAAACTCTCCGCTTTTCAGAAGAAAGCTCTCTCCCATGCTCTATCAT TTCCGTCAGTGGAGAGGGTGGTCTACAGTACTTGCTCAATCCACCAGGCAGEST: gi|24768558|gb|CA403687.1|CA403687
genomic: CATGAAACTCTCCGCTTTTCAGAAGAAAGCTCTCTCCCATGCTCTATCATgtaagtccct ... acctttgcagTTCCGTCAGTGGAGAGGGTGGTCTACAGTACTTGCTCAATCCACCAGGCAG
EST: CATGAAACTCTCCGC-TTTCAGAAGAAAGCTCTCTCCCATGCTCTATCAT TTCCGTCAGTGGAGAGGGTGGTCTACAGTACTTGCTCAATCCACCAGGCAGEST: gi|31352925|gb|CD437282.1|CD437282
genomic: CATGAAACTCTCCGCTTTTCAGAAGAAAGCTCTCTCCCATGCTCTATCATgtaagtccct ... acctttgcagTTCCGTCAGTGGAGAGGGTGGTCTACAGTACTTGCTCAATCCACCAGGCAG
EST: CATGAAACTCTCCGCTTTTCAGAAGAAAGCTCTCTCCCATGCTCTATCAT TTCCGTCAGTGGAGAGGGTGGTCTACAGTACTTGCTCAATCCACCAGGCAGEST: gi|89251520|gb|DY623306.1|DY623306
genomic: CATGAAACTCTCCGCTTTTCAGAAGAAAGCTCTCTCCCATGCTCTATCATgtaagtccct ... acctttgcagTTCCGTCAGTGGAGAGGGTGGTCTACAGTACTTGCTCAATCCACCAGGCAG
EST: CATGAAACTCTCCGCTTTTCAGAAGAAAGCTCTCTCCCATGCTCTATCAT TTCCGTCAGTGGAGAGGGTGGTGTACAGTACTTGCTCAATCCACCAGGCAG
genomic: CATGAAACTCTCCGCTTTTCAGAAGAAAGCTCTCTCCCATGCTCTATCATgtaagtccct ... acctttgcagTTCCGTCAGTGGAGAGGGTGGTCTACAGTACTTGCTCAATCCACCAGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGTCAGGATGATGCGGGTACAAGCTCAAGGGTCATGAAACTCTCCGCTTTTCAGAAGAAAGCTCTCTCCCATGCTCTATCATgtaagtccctgtgccatttgtctctggaatagtcacgtgtcagtgcacaactgtttgcacgaactgaagcttccctccacggctccacctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA