1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACAGCAAGTTCTTCTTGGTCATCTTGACTGGTCTCCAATGCACAAAGATCCAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttgccctttcttctttgggacaattgtgattatacccttcgctggtcttgcaattgtgattttaccctccgttttccaactttgtgttcatagataagctattctggacaattcaatgttatagattagataggctcacaagcatttagctctgtggttgtgatgaaattgcacttataacttggcag
species | Zea mays |
transcript | GRMZM2G163233_T04 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAAGTTTCTGGTGTGAGAGCATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|211415631|gb|FL375675.1|FL375675
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|5296291|gb|AI783061.1|AI783061
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|409609|gb|T12671.1|T12671
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAAAATGATTTCCAG ATTCTGCGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|211345775|gb|FL379635.1|FL379635
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|6760563|gb|AW324662.1|AW324662
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGTGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|60398362|gb|DN231178.1|DN231178
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|40334122|gb|CK368192.1|CK368192
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|15590209|gb|BI674825.1|BI674825
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|211154199|gb|FL451794.1|FL451794
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAATTTTGAAGAGAATGATTTCCAG ATTYTACGAGTTCTCATGACAATCATTGACACATCAAGTGACMCCMCCGCTEST: gi|60353239|gb|DN220212.1|DN220212
genomic: CAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGTGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTTTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|78026061|gb|DV494448.1|DV494448
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|32915729|gb|CF020541.1|CF020541
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: GCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|71757598|gb|DR955535.1|DR955535
genomic: GCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCTEST: gi|37373833|gb|CF623239.1|CF623239
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
EST: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAG ATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
genomic: CAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttg ... aacttggcagATTCTACGAGTTCTCATGACAATCATTGACACATCAAGTGACACCACCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGCAAGTTCTTCTTGGTCATCTTGACTGGTCTCCAATGCACAAAGATCCAAGTTTCTGGCGTGAGAACATTAACAATTTTGAAGAGAATGATTTCCAGgtatgccttgccctttcttctttgggacaattgtgattatacccttcgctggtcttgcaattgtgattttaccctccgttttccaactttgtgttcatagataagctattctggacaattcaatgttatagattagataggctcacaagcatttagctctgtggttgtgatgaaattgcacttataacttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA