Sequence
atgc intronic sequence ATGC exonic sequenceGTATAACCCTGTGGTTTGGGGCGTTCCAAAAGGAAGCTATGCAAGTAACCCAGATGGTCCAAGTCGTATCATTGAGTACCGGCTGATGGTGCAGgtaagcttttctttctatcacggaactttcttacatgaagagttgcaacttgcatcactcatcatatttctgcaatgcatggaggaaggacttgtgggcttaatgtggccagcattttgcaggataacagatgtttccaacttttcatgataaactttgaactgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G158043_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os04g08270.1 (Oryza sativa), 5'ss of exon 3
GTATAACCCTGTGGTTTGGGGCGTTCCAAAAGGAAGCTATGCAAGTAACCCAGATGGTCCAAGTCGTATCATTGAGTACCGGCTGATGGTGCAGgtaagcttttctttctatcacggaactttcttacatgaagagttgcaacttgcatcactcatcatatttctgcaatgcatggaggaaggacttgtgggcttaatgtggccagcattttgcaggataacagatgtttccaacttttcatgataaactttgaactgcag
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GTATGACCCTGTACTCTGGGGGGTTCCAAAAGGAAGCTATGCAAGTAACCCAGATGGTCCTAGTCGTATTATTGAATACCGACAGATGGTTCAGgtgtgttctctatttcaaccctgaaatg-catacataatgaaat---------atcaccctgtttggatgtgtgattccagcaggaat--tctacaaatttcatgtgatttg-------------------------------------------------------
upper sequence: GRMZM2G158043_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA10G34080.1 (Glycine max), 5'ss of exon 11
GTATAACCCTGTGGTTTGGGGCGTTCCAAAAGGAAGCTATGCAAGTAACCCAGATGGTCCAAGTCGTATCATTGAGTACCGGCTGATGGTGCAGgtaagcttttctttctatcacggaactttcttacatgaagagttgcaacttgcatcactcatcatatttctgcaatgcatggaggaaggacttgtgggcttaatgtggccagcattttgcaggataacagatgtttccaacttttcatgataaactttgaactgcag
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GTACAACCCTGTTCTTTGGGGCGTTCCTAAAGGCAGCTATGCAAGTAATCCAAACGGTCCATACCGTACAATTGAGTTCCGAAAGATGGTTATGgtatgaattcatt-----------gttttctaaccgtaagatccatagatctaattttctatt-taatttcgtaatttagatcagtaatactattctctatagtcagtaaatcatttttttttgttctgtctcttgggatttctatacgttgcag------------
upper sequence: GRMZM2G158043_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv13s0019g05160.t01 (Vitis vinifera), 5'ss of exon 11
GTATAACCCTGTGGTTTGGGGCGTTCCAAAAGGAAGCTATGCAAGTAACCCAGATGGTCCAAGTCGTATCATTGAGTACCGGCTGATGGTGCAGgtaagcttttctttctatcacggaactttcttacatgaa-gagttgcaacttgcatcactcatcatatttctgcaatgcatggaggaaggacttgtgggcttaatgtggccagcattttgcaggataacagatgtttccaacttttcatgataaactttgaactgcag
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GTACAATCCTGTTCTCTGGGGGGTTCCTAAAGGAAGCTATGCAAGTAACCCTAATAGTCCATGCCGTACACTTGAGTTTAGAAAGATGGTGCAGgtagggatcttg---------ggtttcattttgcatgaaagaataacagatctgatttttcactgtcttctctcatgg---ggactacagatatgttatgttg-cattacatccacatt-caacttaatcc-tgcttttaagttatttttctaaatttcag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|226431293|gb|GO477629.1|GO477629EST: ACCGGCTGATGGTGCAG GCCTTGAATCGCTTAGGTCTTCGAGTTGTCATGGATGTTGTATACAATCAT
genomic: ACCGGCTGATGGTGCAGgtaagctttt ... tgaactgcagGCCTTGAATCGCTTAGGTCTTCGAGTTGTCATGGATGTTGTATACAATCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATAACCCTGTGGTTTGGGGCGTTCCAAAAGGAAGCTATGCAAGTAACCCAGATGGTCCAAGTCGTATCATTGAGTACCGGCTGATGGTGCAGgtaagcttttctttctatcacggaactttcttacatgaagagttgcaacttgcatcactcatcatatttctgcaatgcatggaggaaggacttgtgggcttaatgtggccagcattttgcaggataacagatgtttccaacttttcatgataaactttgaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT