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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGCTTGCATATGTTTACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtatttttttctttccttattcttgcactttatccattcatgttacatttaaccctttatttaatatataatgtaattgctgcattttttctggagggcctgtaacttctgttgatcttaaactaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacag

Basic information

species Zea mays
transcript GRMZM2G155729_T03
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155729_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os08g10600.3 (Oryza sativa), 5'ss of exon 12
ATCTGCTTGCATATGTTTACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtatttttttc------tttccttattcttgcactttatccat--tcatgttacatttaaccctttatttaatatataatgtaattgctgcattttttctggagggcctgtaacttctgttgatcttaaactaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacag
 | ||| ||||||||||||||||||||||||| || ||||| ||||| |||||||||||||| ||||||| |||||| ||          |   || ||||||  | ||||   |  | ||||| |||||    |     || || |       ||  | ||   |||                                                                                         
GTATGCCTGCATATGTTTACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATgtaagtattgttactgaagaactattttgttcttgagcattatgattcatgatgtttcatttcgttccaacatttatttccgtatcaaaagttgtggttt-----------------------------------------------------------------------------------------

upper sequence: GRMZM2G155729_T03 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 12
ATCTGCTTGCATATGTTTACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtatttttttctttccttattcttgcactttatccattcatgttacatttaaccctttatttaatatataatgtaattgctgcattttttctg-gagggcctgtaacttctgttgatcttaaactaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacag
 ||||||| || ||||| ||| ||||||||||||| |||||| ||||  | |||||||| || |||||||  || | ||   | ||| | | ||   ||   |  |    |   |||   || | |||  || |    | | || |  || ||| |||    ||| || | | | ||                                                                         
GTCTGCTTACACATGTTCACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgtt--gccttcttcactc---caacctccctgcccccatta---ttcatcctccatcttgcttcttat-tgttttctgaattccaactgtgaagacattta-------------------------------------------------------------------------

upper sequence: GRMZM2G155729_T03 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 13
ATCTGCTTGCATATGTTTACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtatttttttctttccttattcttgcactttatccattcatgttacatttaaccctttatttaatatataatgtaattgctgcattttttctggagggcctgtaacttctgttgatcttaaactaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacag
 ||||||| || ||||| ||| |||||||||||||||||||| ||||  | |||||||| || |||||||  || | ||   | ||| | | ||   |  | |  ||   |||     ||||  ||      ||  |   || |||  || ||| |||    |||    | |  | ||                                                                       
GTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgtt--gccttcttaactccaaccttctgccc--ccat----tatttgtcctccatcttgcttcttattgt--tttctgaattccaactgcgaagacatttac-----------------------------------------------------------------------

upper sequence: GRMZM2G155729_T03 (Zea mays), 5'ss of exon 11
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
ATCTGCTTGCATATGTTTACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtatttttttctttccttattcttgcactttatccattcatgttacatttaaccctttatttaatatataatgtaattgctgcattttttctggagggcctgtaacttctgttgatcttaaactaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacag
 | ||||| |||||||||||| |||||||||||||||||||| ||||  | ||||| || || ||||||| |||| |||| || ||     | | |||   || ||  |   | || | ||| |  |   ||| || |   |     ||| |  |||||    | ||   |||  ||                                                                        
GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgc---ttttctgtc--tctttcttttgaaaccacattcaagaccca-caggattacc-catttaacattga---cctaaaat-----------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148942819|gb|EC887852.2|EC887852
EST:     AAAAGGATAGCAT                         TTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG
genomic: AAAAGGATAGCATgtgagtattt ... ttatgcacagTTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG
EST: gi|32789277|gb|CD941513.1|CD941513
EST:     ACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCAT                         TTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG
genomic: ACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtattt ... ttatgcacagTTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG
EST: gi|40303703|gb|CK348090.1|CK348090
EST:     ACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCAT                         TTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG
genomic: ACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtattt ... ttatgcacagTTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG