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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCAGTGCCGATTACGGATGGAAATCTAGGCCAGTCTCTTGATGACACAAACGATGATTTGGGAGCCAGAGAGCCTTATATCAGAACTGATCCCGAGgtaaacttttcgaggggtaatttttaatgggttttgggtcttgaatagatacatacattgttctatgtatgtggtttgtatatgtgtctagattcatcat...

Basic information

species Zea mays
transcript GRMZM2G154621_T01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5901355|gb|AW042455.1|AW042455
EST:     CAAACGATGATTTGGGAGCCAGAGAGCCTTATATCAGAACTGATCCCGAG                         GTTTGTGAAGAATGTATTGGCGAAAGGGAGAGCTGTGCATTGGTGGAAAAA
genomic: CAAACGATGATTTGGGAGCCAGAGAGCCTTATATCAGAACTGATCCCGAGgtaaactttt ... tgtatgctagGTTTGTGAAGAATGTATTGGCGAAAGGGAGAGCTGTGCATTGGTGGAAAAA
EST: gi|32944567|gb|CF049386.1|CF049386
EST:     CAAACGATGATTTGGGAGCCAGAGAGCCTTATATCAGAACTGATCCCGAG                         GTTTGTGAAGAATGTATTGGCGAAAGGGAGAGCTGTGCATTGGTGGAAAAA
genomic: CAAACGATGATTTGGGAGCCAGAGAGCCTTATATCAGAACTGATCCCGAGgtaaactttt ... tgtatgctagGTTTGTGAAGAATGTATTGGCGAAAGGGAGAGCTGTGCATTGGTGGAAAAA
EST: gi|20802745|gb|BQ293795.1|BQ293795
EST:     CAAACGATGATTTGGGAGCCAGAGAGCCTTATATCAGAACTGATCCCGAG                         GTTTGTGAAGAATGTATTGGCGAAAGGGAGAGCTGTGCATTGGTGGAAAAA
genomic: CAAACGATGATTTGGGAGCCAGAGAGCCTTATATCAGAACTGATCCCGAGgtaaactttt ... tgtatgctagGTTTGTGAAGAATGTATTGGCGAAAGGGAGAGCTGTGCATTGGTGGAAAAA
EST: gi|160481616|gb|EY254448.1|EY254448
EST:     CAAACGATGATTTGGGAGCCAGAGAGCCTTATATCAGAACTGATCCCGAG                         GTTTGTGAAGAATGTATTGGCGAAAGG
genomic: CAAACGATGATTTGGGAGCCAGAGAGCCTTATATCAGAACTGATCCCGAGgtaaactttt ... tgtatgctagGTTTGTGAAGAATGTATTGGCGAAAGG