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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTAGGAGCGGGCCCTGTTCCAGCGCTACTTCTTCCTGAAATATTTGCCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatgattgttcacacatacgctaatataccaaacatatataattgtcctaagtcccaatttatcacattctgttttattcattgtgttatatcg...

Basic information

species Zea mays
transcript GRMZM2G153704_T07
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153704_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g04190.1 (Oryza sativa), 5'ss of exon 13
TGCTCTAGGAGCGGGCCCTGTTCCAGCGCTACTTCTTCCTGAAATATTTGCCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatgattgttcacacatacgctaatataccaaacat---atataattgtcctaagtcccaatttatca--cattctgttttattcattgtgttatatcg
|||||| ||||| ||||| ||||||||  | || |||||||||||||||||||| ||||||||||| || ||||| ||||||||||| |||||||||||||| ||| ||| ||| |       | |  | | |  || |  |   || |  ||  |   | |   | |||| |     |||| | | ||| |   | || |    
TGCTCTTGGAGCTGGCCCAGTTCCAGCATTGCTCCTTCCTGAAATATTTGCCTCCAGAATAAGGGCTAAAGCTGTTGCATTATCTCTGGGCATGCACTGGgtaagttatgcttggtgtgttggatga-agtttgacagatttgtgatgtggttagctataatattagtttaactgcttttctatataattgaaaatatttt----

upper sequence: GRMZM2G153704_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 13
TGCTCTAGGAGCGGGCCCTGTTCCAGCGCTACTTCTTCCTGAAATATTTGCCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatgattgttcacacatacgctaatataccaaacatatataattgtcctaagtcccaatttatcacattctgttttattcattgtgttatatcg-------
  |||| || || || ||||| || || || |||||||| |||||||||||||| ||||| ||||| || || || || |||||  |||||||||| ||||| ||| | ||      | | ||   |   | ||| |   || | |   |   | |||   || |||   | |||| || ||     | || ||   |         
CTCTCTTGGTGCTGGTCCTGTCCCTGCTCTTCTTCTTCCAGAAATATTTGCCTCTAGAATCAGGGCAAAAGCAGTTGCTTTATCATTAGGCATGCATTGGgtaagtgaaga------agaaatgatcctgt-tactactgatttttttcttatcaaagatgcactttgaaagattcagtattgcctgtagtttttgctttctctctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148981334|gb|EE027588.2|EE027588
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|101389575|gb|EB816720.1|EB816720
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|67035008|gb|CO463541.1|CO463541
EST:     CCTCGAGATTAAGGGCCAAGGCTGTTGCATTATCTCCANGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGCCG-GAGCA
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCA
EST: gi|211050165|gb|FL124866.1|FL124866
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTCAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|211050168|gb|FL124869.1|FL124869
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|149071544|gb|EE159937.2|EE159937
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60355926|gb|DN222899.1|DN222899
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|149109615|gb|EE293402.2|EE293402
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|116826239|gb|EC870015.1|EC870015
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAA
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAA
EST: gi|149055221|gb|EE156146.2|EE156146
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|67011667|gb|CO440416.1|CO440416
EST:     CCTCGAGAATAAGGGCCAAGGCTGTTGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|211050172|gb|FL124873.1|FL124873
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTCAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|211050170|gb|FL124871.1|FL124871
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTCAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60351782|gb|DN218755.1|DN218755
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|33092425|gb|CF052419.1|CF052419
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60401429|gb|DN234236.1|DN234236
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|211106867|gb|FL216747.1|FL216747
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTCAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|94472602|gb|EB701560.1|EB701560
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60353755|gb|DN220728.1|DN220728
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60358931|gb|DN225904.1|DN225904
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|78075827|gb|DV504261.1|DV504261
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60355312|gb|DN222285.1|DN222285
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|18963572|gb|BM660510.1|BM660510
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|148996906|gb|EE035710.2|EE035710
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|110951781|gb|EE171833.1|EE171833
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT